org.eaglei.datatools.jena
Class RESTRepositoryProvider

java.lang.Object
  org.eaglei.datatools.jena.RESTRepositoryProvider

All Implemented Interfaces:

RepositoryProvider

public final class RESTRepositoryProvider
extends java.lang.Object
implements RepositoryProvider

Author:

Ricardo De Lima, Lucy Hadden, Daniela Bourges April 11, 2010 Center for Biomedical Informatics (CBMI)

Field Summary

protected static java.lang.String

READ_VIEW

Fields inherited from interface org.eaglei.datatools.provider.RepositoryProvider

DEFAULT_WORKSPACE_ENTITY

Constructor Summary

RESTRepositoryProvider(DatatoolsConfiguration config)

Method Summary

java.lang.String	claim(org.eaglei.security.Session session, org.eaglei.model.EIURI uri, java.lang.String claimant)
void	createInstance(org.eaglei.security.Session session, org.eaglei.model.EIInstance instance, org.eaglei.model.EIEntity workspaceEntity)
void	createInstance(org.eaglei.security.Session session, java.lang.String rdfString, java.lang.String instanceUri, org.eaglei.model.EIEntity workspaceEntity)
org.eaglei.model.EIInstance	deepCopy(org.eaglei.security.Session session, org.eaglei.model.EIURI originalUri)
void	deleteInstance(org.eaglei.security.Session session, org.eaglei.model.EIURI instanceUri)
org.eaglei.model.EIInstance	duplicateInstance(org.eaglei.security.Session session, org.eaglei.model.EIInstance original)
java.util.List<org.eaglei.model.EIInstanceMinimal>	EIQuery(org.eaglei.security.Session session, java.lang.String sparql)
org.eaglei.model.EIInstance	getEmptyEIInstance(org.eaglei.security.Session session, org.eaglei.model.EIURI classUri)
org.eaglei.model.EIInstance	getEmptyEIInstance(org.eaglei.security.Session session, org.eaglei.model.EIURI classUri, org.eaglei.model.EIEntity instanceEntity)
java.util.List<org.eaglei.model.EIInstanceMinimal>	getFilterQuery(org.eaglei.security.Session session, org.eaglei.model.EIURI classUri, org.eaglei.model.EIURI state, org.eaglei.model.EIURI lab)
java.util.List<org.eaglei.model.EIInstanceMinimal>	getFilterQuery(org.eaglei.security.Session session, org.eaglei.model.EIURI classUri, org.eaglei.model.EIURI state, org.eaglei.model.EIURI lab, boolean strictOwnerFilter)
org.eaglei.model.EIInstance	getInstance(org.eaglei.security.Session session, org.eaglei.model.EIURI instanceID)
java.util.List<org.eaglei.model.EIURI>	getNewInstanceID(org.eaglei.security.Session session, int count)
protected java.lang.String	getToken(org.eaglei.security.Session session, java.lang.String instanceUri)
protected User	getUserInformation(org.eaglei.security.Session session, org.apache.commons.httpclient.HttpClient client)
java.lang.String[]	getWFStates(org.eaglei.security.Session session)
java.util.List<org.eaglei.model.EIURI>	getWFStatesList(org.eaglei.security.Session session)
java.util.List<Workspace>	getWorkspaces(org.eaglei.security.Session session)
boolean	isOnline()
User	login(java.lang.String userName, java.lang.String password)
void	logout(org.eaglei.security.Session session)
java.lang.String	promote(org.eaglei.security.Session session, org.eaglei.model.EIURI uri, org.eaglei.model.EIURI newState)
java.lang.String	query(org.eaglei.security.Session session, java.lang.String sparql)
java.util.List<org.eaglei.model.EIInstanceMinimal>	referencedByQuery(org.eaglei.security.Session session, org.eaglei.model.EIURI resourceUri, boolean strictOwnerFilter)
java.lang.String	retrieveLabel(org.eaglei.security.Session session, org.eaglei.model.EIURI uri)
java.util.Map<org.eaglei.model.EIEntity,java.lang.String>	retrieveLabels(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIEntity> entities)
java.util.Map<org.eaglei.model.EIURI,java.lang.String>	retrieveUriLabels(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIURI> uris)
protected void	setReadParameters(org.apache.commons.httpclient.methods.PostMethod method)
protected void	setWriteParameters(org.apache.commons.httpclient.methods.PostMethod method, java.lang.String id)
protected java.lang.String	updateAndGetToken(org.eaglei.security.Session session, org.eaglei.model.EIInstance instance)
protected java.lang.String	updateAndGetToken(org.eaglei.security.Session session, java.lang.String rdfString, java.lang.String instanceUri)
java.lang.String	updateInstance(org.eaglei.security.Session session, org.eaglei.model.EIInstance instance, java.lang.String token)
java.lang.String	updateInstance(org.eaglei.security.Session session, java.lang.String rdfString, java.lang.String instanceUri, java.lang.String token)
void	uploadInstances(org.eaglei.security.Session session, java.lang.String rdf) Deprecated.
User	whoami(org.eaglei.security.Session session)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

READ_VIEW

protected static final java.lang.String READ_VIEW

See Also:

Constant Field Values

Constructor Detail

RESTRepositoryProvider

public RESTRepositoryProvider(DatatoolsConfiguration config)
                       throws java.io.IOException

Throws:

java.io.IOException

Method Detail

setWriteParameters

protected void setWriteParameters(org.apache.commons.httpclient.methods.PostMethod method,
                                  java.lang.String id)

setReadParameters

protected void setReadParameters(org.apache.commons.httpclient.methods.PostMethod method)

createInstance

public void createInstance(org.eaglei.security.Session session,
                           org.eaglei.model.EIInstance instance,
                           org.eaglei.model.EIEntity workspaceEntity)
                    throws java.lang.Exception

Specified by:

createInstance in interface RepositoryProvider

Throws:

java.lang.Exception

createInstance

public void createInstance(org.eaglei.security.Session session,
                           java.lang.String rdfString,
                           java.lang.String instanceUri,
                           org.eaglei.model.EIEntity workspaceEntity)
                    throws java.lang.Exception

Throws:

java.lang.Exception

deepCopy

public org.eaglei.model.EIInstance deepCopy(org.eaglei.security.Session session,
                                            org.eaglei.model.EIURI originalUri)
                                     throws java.lang.Exception

Specified by:

deepCopy in interface RepositoryProvider

Throws:

java.lang.Exception

duplicateInstance

public org.eaglei.model.EIInstance duplicateInstance(org.eaglei.security.Session session,
                                                     org.eaglei.model.EIInstance original)
                                              throws java.lang.Exception

Throws:

java.lang.Exception

deleteInstance

public void deleteInstance(org.eaglei.security.Session session,
                           org.eaglei.model.EIURI instanceUri)
                    throws java.lang.Exception

Specified by:

deleteInstance in interface RepositoryProvider

Throws:

java.lang.Exception

updateInstance

public java.lang.String updateInstance(org.eaglei.security.Session session,
                                       org.eaglei.model.EIInstance instance,
                                       java.lang.String token)
                                throws java.lang.Exception

Specified by:

updateInstance in interface RepositoryProvider

Throws:

java.lang.Exception

updateInstance

public java.lang.String updateInstance(org.eaglei.security.Session session,
                                       java.lang.String rdfString,
                                       java.lang.String instanceUri,
                                       java.lang.String token)
                                throws java.lang.Exception

Throws:

java.lang.Exception

updateAndGetToken

protected java.lang.String updateAndGetToken(org.eaglei.security.Session session,
                                             org.eaglei.model.EIInstance instance)
                                      throws java.lang.Exception

Throws:

java.lang.Exception

getToken

protected java.lang.String getToken(org.eaglei.security.Session session,
                                    java.lang.String instanceUri)
                             throws java.lang.Exception

Throws:

java.lang.Exception

updateAndGetToken

protected java.lang.String updateAndGetToken(org.eaglei.security.Session session,
                                             java.lang.String rdfString,
                                             java.lang.String instanceUri)
                                      throws java.lang.Exception

Throws:

java.lang.Exception

getInstance

public org.eaglei.model.EIInstance getInstance(org.eaglei.security.Session session,
                                               org.eaglei.model.EIURI instanceID)
                                        throws java.lang.Exception

Specified by:

getInstance in interface RepositoryProvider

Throws:

java.lang.Exception

getNewInstanceID

public java.util.List<org.eaglei.model.EIURI> getNewInstanceID(org.eaglei.security.Session session,
                                                               int count)
                                                        throws java.lang.Exception

Specified by:

getNewInstanceID in interface RepositoryProvider

Throws:

java.lang.Exception

getUserInformation

protected User getUserInformation(org.eaglei.security.Session session,
                                  org.apache.commons.httpclient.HttpClient client)
                           throws java.lang.Exception

Throws:

java.lang.Exception

getWorkspaces

public java.util.List<Workspace> getWorkspaces(org.eaglei.security.Session session)
                                        throws java.lang.Exception

Specified by:

getWorkspaces in interface RepositoryProvider

Throws:

java.lang.Exception

login

public User login(java.lang.String userName,
                  java.lang.String password)
           throws java.lang.Exception

Specified by:

login in interface RepositoryProvider

Throws:

java.lang.Exception

logout

public void logout(org.eaglei.security.Session session)
            throws java.lang.Exception

Specified by:

logout in interface RepositoryProvider

Throws:

java.lang.Exception

whoami

public User whoami(org.eaglei.security.Session session)
            throws java.lang.Exception

Specified by:

whoami in interface RepositoryProvider

Throws:

java.lang.Exception

getEmptyEIInstance

public org.eaglei.model.EIInstance getEmptyEIInstance(org.eaglei.security.Session session,
                                                      org.eaglei.model.EIURI classUri,
                                                      org.eaglei.model.EIEntity instanceEntity)
                                               throws java.lang.Exception

Specified by:

getEmptyEIInstance in interface RepositoryProvider

Throws:

java.lang.Exception

getEmptyEIInstance

public org.eaglei.model.EIInstance getEmptyEIInstance(org.eaglei.security.Session session,
                                                      org.eaglei.model.EIURI classUri)
                                               throws java.lang.Exception

Specified by:

getEmptyEIInstance in interface RepositoryProvider

Throws:

java.lang.Exception

isOnline

public boolean isOnline()

Specified by:

isOnline in interface RepositoryProvider

query

public java.lang.String query(org.eaglei.security.Session session,
                              java.lang.String sparql)
                       throws java.lang.Exception

Specified by:

query in interface RepositoryProvider

Throws:

java.lang.Exception

EIQuery

public java.util.List<org.eaglei.model.EIInstanceMinimal> EIQuery(org.eaglei.security.Session session,
                                                                  java.lang.String sparql)
                                                           throws java.lang.Exception

Specified by:

EIQuery in interface RepositoryProvider

Throws:

java.lang.Exception

getFilterQuery

public java.util.List<org.eaglei.model.EIInstanceMinimal> getFilterQuery(org.eaglei.security.Session session,
                                                                         org.eaglei.model.EIURI classUri,
                                                                         org.eaglei.model.EIURI state,
                                                                         org.eaglei.model.EIURI lab)
                                                                  throws java.lang.Exception

Specified by:

getFilterQuery in interface RepositoryProvider

Throws:

java.lang.Exception

getFilterQuery

public java.util.List<org.eaglei.model.EIInstanceMinimal> getFilterQuery(org.eaglei.security.Session session,
                                                                         org.eaglei.model.EIURI classUri,
                                                                         org.eaglei.model.EIURI state,
                                                                         org.eaglei.model.EIURI lab,
                                                                         boolean strictOwnerFilter)
                                                                  throws java.lang.Exception

Specified by:

getFilterQuery in interface RepositoryProvider

Throws:

java.lang.Exception

referencedByQuery

public java.util.List<org.eaglei.model.EIInstanceMinimal> referencedByQuery(org.eaglei.security.Session session,
                                                                            org.eaglei.model.EIURI resourceUri,
                                                                            boolean strictOwnerFilter)
                                                                     throws java.lang.Exception

Specified by:

referencedByQuery in interface RepositoryProvider

Throws:

java.lang.Exception

uploadInstances

@Deprecated
public void uploadInstances(org.eaglei.security.Session session,
                                       java.lang.String rdf)
                     throws java.lang.Exception

Deprecated.

Throws:

java.lang.Exception

claim

public java.lang.String claim(org.eaglei.security.Session session,
                              org.eaglei.model.EIURI uri,
                              java.lang.String claimant)
                       throws java.lang.Exception

Specified by:

claim in interface RepositoryProvider

Throws:

java.lang.Exception

promote

public java.lang.String promote(org.eaglei.security.Session session,
                                org.eaglei.model.EIURI uri,
                                org.eaglei.model.EIURI newState)
                         throws java.lang.Exception

Specified by:

promote in interface RepositoryProvider

Throws:

java.lang.Exception

getWFStatesList

public java.util.List<org.eaglei.model.EIURI> getWFStatesList(org.eaglei.security.Session session)
                                                       throws java.lang.Exception

Throws:

java.lang.Exception

getWFStates

public java.lang.String[] getWFStates(org.eaglei.security.Session session)
                               throws java.lang.Exception

Specified by:

getWFStates in interface RepositoryProvider

Throws:

java.lang.Exception

retrieveLabels

public java.util.Map<org.eaglei.model.EIEntity,java.lang.String> retrieveLabels(org.eaglei.security.Session session,
                                                                                java.util.List<org.eaglei.model.EIEntity> entities)
                                                                         throws java.lang.Exception

Specified by:

retrieveLabels in interface RepositoryProvider

Throws:

java.lang.Exception

retrieveUriLabels

public java.util.Map<org.eaglei.model.EIURI,java.lang.String> retrieveUriLabels(org.eaglei.security.Session session,
                                                                                java.util.List<org.eaglei.model.EIURI> uris)
                                                                         throws java.lang.Exception

Specified by:

retrieveUriLabels in interface RepositoryProvider

Throws:

java.lang.Exception

retrieveLabel

public java.lang.String retrieveLabel(org.eaglei.security.Session session,
                                      org.eaglei.model.EIURI uri)
                               throws java.lang.Exception

Specified by:

retrieveLabel in interface RepositoryProvider

Throws:

java.lang.Exception