A C D E F G H I L N O P R S T U V

A

addDatattypeProperty(EIEntity, String) - Method in class org.eaglei.model.EIBasicInstance

addDatattypeProperty(EIEntity, String) - Method in class org.eaglei.model.EIInstance

addEIType(EIEntity) - Method in class org.eaglei.model.EIBasicInstance

addEIType(EIEntity) - Method in class org.eaglei.model.EIInstance

addEIType(EIEntity) - Method in class org.eaglei.model.EIInstanceMinimal

addEmbeddedInstance(EIEntity, EIInstance) - Method in class org.eaglei.model.EIInstance

addMaterializedInverseProperty(EIEntity, EIInstanceMinimal) - Method in class org.eaglei.model.EIInstance

addMaterializedInverseProperty(EIEntity, EIInstanceMinimal) - Method in class org.eaglei.model.ReferencingResources

addNonOntologyLiteralProperty(EIEntity, String) - Method in class org.eaglei.model.EIInstance

addNonOntologyLiteralProperty(EIEntity, String) - Method in class org.eaglei.model.NonOntologyProperties

addNonOntologyResourceProperty(EIEntity, EIEntity) - Method in class org.eaglei.model.EIInstance

addNonOntologyResourceProperty(EIEntity, EIEntity) - Method in class org.eaglei.model.NonOntologyProperties

addObjectProperty(EIEntity, EIEntity) - Method in class org.eaglei.model.EIBasicInstance

addObjectProperty(EIEntity, EIEntity) - Method in class org.eaglei.model.EIInstance

C

CG_DATA_MODEL_CREATE - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_CLASS_GROUP annotation that indicates instances of this class can be directly created (as opposed to being created as a secondary instance, either linked or embedded)

CG_EMBEDDED_CLASS - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_CLASS_GROUP annotation that indicates a root of a type hierarchy for which all instances of these types will be referenced by one and only instance.

CG_NO_ASSERTED_INSTANCES - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_CLASS_GROUP annotation that indicates this class should not be allowed as the asserted type of an eagle-i resource instance.

CG_NON_RESOURCE_ROOT - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_CLASS_GROUP annotation that indicates a root of an eagle-i non-resource type hierarchy.

CG_RESOURCE_PROVIDER - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_CLASS_GROUP annotation that indicates instances of this class can provide resources (serve as location, etc)

CG_RESOURCE_ROOT - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_CLASS_GROUP annotation that indicates a root of an eagle-i resource type hierarchy.

CG_SEARCH_FLATTEN - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_CLASS_GROUP annotation that indicates a root of a type hierarchy for which all instance data for these types should be indexed by the search engine as part of the referencing instance.

compareTo(Object) - Method in class org.eaglei.model.EIBasicInstance

compareTo(EIEntity) - Method in class org.eaglei.model.EIEntity

compareTo(Object) - Method in class org.eaglei.model.EIInstance

compareTo(Object) - Method in class org.eaglei.model.EIInstanceMinimal

create(String, String) - Static method in class org.eaglei.model.EIEntity

create(EIURI, String) - Static method in class org.eaglei.model.EIEntity

create(EIURI, String, String) - Method in interface org.eaglei.model.EIInstanceFactory

Create an EIInstance from an RDF String serialization in one of the RDF languages supported by Jena

create(EIEntity, EIEntity) - Static method in class org.eaglei.model.EIInstanceMinimal

create(EIInstance) - Static method in class org.eaglei.model.EIInstanceMinimal

create(String) - Static method in class org.eaglei.model.EIURI

createEmbedded(EIURI, String, String) - Method in interface org.eaglei.model.EIInstanceFactory

Create an embedded EIInstance from an RDF String serialization in one of the RDF languages supported by Jena

createEmpty(EIURI, EIEntity) - Method in interface org.eaglei.model.EIInstanceFactory

Create an EIInstance with no properties other than an eiType (at least one type must be set)

createEmptyBasicInstance(EIEntity) - Static method in class org.eaglei.model.EIBasicInstance

createEmptyInstance(EIEntity, EIEntity) - Static method in class org.eaglei.model.EIInstance

Deprecated.

createEmptyInstance(EIClass, EIEntity) - Static method in class org.eaglei.model.EIInstance

createExtended(EIURI, String, String) - Method in interface org.eaglei.model.EIInstanceFactory

Create an extended EIInstance from an RDF String serialization in one of the RDF languages supported by Jena

D

DIRECT_TYPE_URI - Static variable in class org.eaglei.model.EIOntConstants

URI for property that is used to record the direct rdf:type of a resource when the type hierarchy is being materialized.

DOMAIN_CONSTRAINT - Static variable in class org.eaglei.model.EIOntConstants

URI of annotation property that is used to specify a list of domain URIs that should take precedence over the domain specification in the ontoloyg model.

E

EAGLE_I_APP_EXT_URI - Static variable in class org.eaglei.model.EIOntConstants

URI of the eagle-i model root

EAGLE_I_APP_ONT_URI - Static variable in class org.eaglei.model.EIOntConstants

Namespace of eagle-i-app-ont.owl ontology.

EAGLE_I_URI - Static variable in class org.eaglei.model.EIOntConstants

URI of the eagle-i.owl ontology

EI_LAB - Static variable in class org.eaglei.model.EIOntConstants

EI_ORGANIZATION - Static variable in class org.eaglei.model.EIOntConstants

EI_PREFERRED_DEFINITION_URI - Static variable in class org.eaglei.model.EIOntConstants

URI of the eagle-i preferred definition annotation property

EI_PREFERRED_LABEL - Static variable in class org.eaglei.model.EIOntConstants

URI of annotation property that is used to specify eagle-i specific preferred labels

EIBasicInstance - Class in org.eaglei.model

EIClass - Class in org.eaglei.model

EIClass(EIEntity, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class org.eaglei.model.EIClass

EIDatatypeProperty - Class in org.eaglei.model

EIDatatypeProperty(EIEntity, String) - Constructor for class org.eaglei.model.EIDatatypeProperty

EIEntity - Class in org.eaglei.model

A class that associates a label string with a URI.

EIEquivalentClass - Class in org.eaglei.model

This data structure represents equivalence information.

EIEquivalentClass(String, List<EIClass>) - Constructor for class org.eaglei.model.EIEquivalentClass

EIInstance - Class in org.eaglei.model

EIInstanceFactory - Interface in org.eaglei.model

EIInstanceMinimal - Class in org.eaglei.model

EIObjectProperty - Class in org.eaglei.model

EIObjectProperty(EIEntity, EIClass) - Constructor for class org.eaglei.model.EIObjectProperty

EIObjectProperty(EIEntity, List<EIClass>) - Constructor for class org.eaglei.model.EIObjectProperty

EIOntConstants - Class in org.eaglei.model

Holds eagle-i ontology constants

EIOntConstants() - Constructor for class org.eaglei.model.EIOntConstants

EIOntModel - Interface in org.eaglei.model

Provides access to the eagle-i ontology model, a.k.a the data model.

EIOntModel.Visitor - Interface in org.eaglei.model

Interface passed into a call to traverseDataModel.

EIOntResource - Class in org.eaglei.model

EIOntResource() - Constructor for class org.eaglei.model.EIOntResource

EIOntResource(EIEntity) - Constructor for class org.eaglei.model.EIOntResource

EIProperty - Class in org.eaglei.model

EIProperty() - Constructor for class org.eaglei.model.EIProperty

EIProperty(EIEntity) - Constructor for class org.eaglei.model.EIProperty

EIResource - Class in org.eaglei.model

EIResource() - Constructor for class org.eaglei.model.EIResource

EIResource(EIEntity) - Constructor for class org.eaglei.model.EIResource

EIURI - Class in org.eaglei.model

EIValueRestriction - Class in org.eaglei.model

A very simple representation of the restriction constructs we currently support.

EIValueRestriction(EIValueRestriction.Type, String, EIClass) - Constructor for class org.eaglei.model.EIValueRestriction

EIValueRestriction.Type - Enum in org.eaglei.model

equals(Object) - Method in class org.eaglei.model.EIEntity

equals(Object) - Method in class org.eaglei.model.EIResource

equals(Object) - Method in class org.eaglei.model.EIURI

F

findPropertyForInstance(EIEntity) - Method in class org.eaglei.model.EIBasicInstance

findPropertyForInstance(EIEntity) - Method in class org.eaglei.model.EIInstance

G

generateStackTrace(Deque<String>) - Method in interface org.eaglei.model.EIOntModel

Produces a default display string from the semantic relationship stack generated by data model traversal.

getAnnotations() - Method in class org.eaglei.model.EIClass

getAnnotations() - Method in class org.eaglei.model.EIProperty

getClass(EIURI) - Method in interface org.eaglei.model.EIOntModel

Returns an EIClass for the given URI.

getClassAnnotations(List<EIURI>) - Method in interface org.eaglei.model.EIOntModel

Gets the set of class group annotation values for a given list of classes.

getClassAnnotations(EIURI) - Method in interface org.eaglei.model.EIOntModel

Gets the set of class group annotation values for a single EIClass.

getClassDefinition(EIURI) - Method in interface org.eaglei.model.EIOntModel

getClassDefinitions(List<EIURI>) - Method in interface org.eaglei.model.EIOntModel

Gets property annotations for a given class.

getClassesInGroup(String) - Method in interface org.eaglei.model.EIOntModel

Return the list of EIClasses with the given class group annotation.

getCreationDate() - Method in class org.eaglei.model.EIInstance

getCreationDate() - Method in class org.eaglei.model.EIInstanceMinimal

getCreationDate() - Method in class org.eaglei.model.NonOntologyProperties

getDataModelRootSuperClass() - Method in class org.eaglei.model.EIInstanceMinimal

getDatatypeProperties() - Method in class org.eaglei.model.EIBasicInstance

getDatatypeProperties() - Method in class org.eaglei.model.EIInstance

getDatatypeProperty(EIEntity) - Method in class org.eaglei.model.EIBasicInstance

getDatatypeProperty(EIEntity) - Method in class org.eaglei.model.EIInstance

getDefinition() - Method in class org.eaglei.model.EIOntResource

A class definition string.

getEIClass() - Method in class org.eaglei.model.EIValueRestriction

getEmbeddedInstance(EIEntity) - Method in class org.eaglei.model.EIInstance

getEmbeddedInstanceList() - Method in class org.eaglei.model.EIInstance

getEmbeddedInstances() - Method in class org.eaglei.model.EIInstance

getEmbeddedInstanceUriList() - Method in class org.eaglei.model.EIInstance

getEntity() - Method in class org.eaglei.model.EIInstance

getEntity() - Method in class org.eaglei.model.EIResource

getEntity() - Method in class org.eaglei.model.SearchEIInstancePreview

getEquivalentClasses() - Method in class org.eaglei.model.EIClass

Gets the equivalent classes of this class.

getEquivalentClasses(EIURI) - Method in interface org.eaglei.model.EIOntModel

getEquivalentTo() - Method in class org.eaglei.model.EIEquivalentClass

Gets the List of EIClasses that this data structure expresses equivalence to.

getInstanceClass() - Method in class org.eaglei.model.EIBasicInstance

getInstanceClass() - Method in class org.eaglei.model.EIInstance

getInstanceLabel() - Method in class org.eaglei.model.EIBasicInstance

getInstanceLabel() - Method in class org.eaglei.model.EIInstance

getInstanceLabel() - Method in class org.eaglei.model.EIInstanceMinimal

getInstanceLabel() - Method in class org.eaglei.model.SearchEIInstancePreview

getInstanceType() - Method in class org.eaglei.model.EIBasicInstance

getInstanceType() - Method in class org.eaglei.model.EIInstance

getInstanceType() - Method in class org.eaglei.model.EIInstanceMinimal

getInstanceType() - Method in class org.eaglei.model.SearchEIInstancePreview

getInstanceURI() - Method in class org.eaglei.model.EIBasicInstance

getInstanceURI() - Method in class org.eaglei.model.EIInstance

getInstanceURI() - Method in class org.eaglei.model.EIInstanceMinimal

getInstanceURI() - Method in class org.eaglei.model.SearchEIInstancePreview

getInverseURI() - Method in class org.eaglei.model.EIObjectProperty

getLab() - Method in class org.eaglei.model.EIInstanceMinimal

getLabel() - Method in class org.eaglei.model.EIEntity

getLabels(EIURI) - Method in interface org.eaglei.model.EIOntModel

Retrieves all unique labels for the specified resource using the the following priority order http://eagle-i.org/ont/app/1.0/preferredLabel http://purl.obolibrary.org/obo/IAO_0000111 (IAO preferred term) rdfs:label http://purl.obolibrary.org/obo/IAO_0000118 (IAO alternate term)

getMaterializedInverseProperties() - Method in class org.eaglei.model.EIInstance

getMaterializedInverseProperties() - Method in class org.eaglei.model.ReferencingResources

getMaterializedInverseProperty(EIEntity) - Method in class org.eaglei.model.ReferencingResources

getModificationDate() - Method in class org.eaglei.model.EIInstance

getModificationDate() - Method in class org.eaglei.model.NonOntologyProperties

getModifiedDate() - Method in class org.eaglei.model.EIInstanceMinimal

getNonOntologyLiteralProperties() - Method in class org.eaglei.model.EIInstance

getNonOntologyLiteralProperties() - Method in class org.eaglei.model.NonOntologyProperties

getNonOntologyLiteralProperty(EIEntity) - Method in class org.eaglei.model.EIInstance

getNonOntologyLiteralProperty(EIEntity) - Method in class org.eaglei.model.NonOntologyProperties

getNonOntologyResourceProperties() - Method in class org.eaglei.model.EIInstance

getNonOntologyResourceProperties() - Method in class org.eaglei.model.NonOntologyProperties

getNonOntologyResourceProperty(EIEntity) - Method in class org.eaglei.model.EIInstance

getNonOntologyResourceProperty(EIEntity) - Method in class org.eaglei.model.NonOntologyProperties

getNonResourceBaseClasses() - Method in interface org.eaglei.model.EIOntModel

Deprecated. Use getClassesInGroup(EIOntConstants.CG_NON_RESOURCE_ROOT)

getObjectProperties() - Method in class org.eaglei.model.EIBasicInstance

getObjectProperties() - Method in class org.eaglei.model.EIInstance

getObjectProperty(EIEntity) - Method in class org.eaglei.model.EIBasicInstance

getObjectProperty(EIEntity) - Method in class org.eaglei.model.EIInstance

getOtherEITypes() - Method in class org.eaglei.model.EIBasicInstance

getOtherEITypes() - Method in class org.eaglei.model.EIInstance

getOtherEITypes() - Method in class org.eaglei.model.EIInstanceMinimal

getPreferredLabel(EIURI) - Method in interface org.eaglei.model.EIOntModel

Retrieves the preferred label for the specified resource.

getProperties() - Method in class org.eaglei.model.EIClass

Gets the properties of this class.

getProperties(EIURI) - Method in interface org.eaglei.model.EIOntModel

getPropertyCount() - Method in class org.eaglei.model.SearchEIInstancePreview

getPropertyDefinition(EIURI) - Method in interface org.eaglei.model.EIOntModel

getPropertyDefinitions(List<EIURI>) - Method in interface org.eaglei.model.EIOntModel

getRange() - Method in class org.eaglei.model.EIObjectProperty

Deprecated. Should call getRangeList() instead.

getRangeList() - Method in class org.eaglei.model.EIObjectProperty

If there are more than one range class, returns the first one.

getReadOnlyLiteralProperties() - Method in class org.eaglei.model.EIInstance

getReadOnlyLiteralProperties() - Method in class org.eaglei.model.NonOntologyProperties

getReadOnlyResourceProperties() - Method in class org.eaglei.model.EIInstance

getReadOnlyResourceProperties() - Method in class org.eaglei.model.NonOntologyProperties

getRealInstance() - Method in class org.eaglei.model.SearchEIInstancePreview

getReferencedByList() - Method in class org.eaglei.model.EIInstance

getReferencedByList() - Method in class org.eaglei.model.ReferencingResources

getResourceProviderProperties() - Method in interface org.eaglei.model.EIOntModel

Gets the set of property URIs annotated as a resource provider relationship.

getResourceProviderProperty(EIURI) - Method in interface org.eaglei.model.EIOntModel

Gets the resource provider property for a given class URI.

getResourceProviderPropertyMap() - Method in interface org.eaglei.model.EIOntModel

Gets a map of eagle-i primary resources to one of their properties which is annotated as the resource provider relationship.

getRootSuperType() - Method in class org.eaglei.model.EIBasicInstance

getRootSuperType() - Method in class org.eaglei.model.EIInstance

getStubPropertyValue() - Method in class org.eaglei.model.NonOntologyProperties

getStubs() - Method in class org.eaglei.model.EIInstance

getSubClasses() - Method in class org.eaglei.model.EIClass

Gets the subclasses of this class.

getSubClasses(EIURI) - Method in interface org.eaglei.model.EIOntModel

getSuperClass() - Method in class org.eaglei.model.EIClass

Gets the superclass of this class.

getSuperClass(EIClass) - Method in interface org.eaglei.model.EIOntModel

getSuperClasses() - Method in class org.eaglei.model.EIClass

Gets the list of superclasses of this class.

getSuperClasses(EIURI) - Method in interface org.eaglei.model.EIOntModel

The first member of the list is the direct superclass of the given class.

getTopLevelClasses() - Method in interface org.eaglei.model.EIOntModel

Deprecated. Use getClassesInGroup(EIOntConstants.CG_RESOURCE_ROOT)

getType() - Method in class org.eaglei.model.EIValueRestriction

getTypeLabel() - Method in class org.eaglei.model.EIDatatypeProperty

getURI() - Method in class org.eaglei.model.EIEntity

getURI() - Method in class org.eaglei.model.EIEquivalentClass

URI of the equivalent class data structure itself.

getURI() - Method in class org.eaglei.model.EIValueRestriction

getValueRestriction() - Method in class org.eaglei.model.EIProperty

getValueRestrictionMap() - Method in class org.eaglei.model.EIClass

getVersion() - Method in interface org.eaglei.model.EIOntModel

Gets the version of the eagle-i ontology.

getWFOwner() - Method in class org.eaglei.model.EIInstance

getWFOwner() - Method in class org.eaglei.model.EIInstanceMinimal

getWFOwner() - Method in class org.eaglei.model.NonOntologyProperties

getWFOwnerUri() - Method in class org.eaglei.model.EIInstanceMinimal

getWFState() - Method in class org.eaglei.model.EIInstance

getWFState() - Method in class org.eaglei.model.EIInstanceMinimal

getWFState() - Method in class org.eaglei.model.NonOntologyProperties

getWFStateUri() - Method in class org.eaglei.model.EIInstanceMinimal

H

hasAllRequiredProperties() - Method in class org.eaglei.model.EIBasicInstance

hasAllRequiredProperties() - Method in class org.eaglei.model.EIInstance

hasAllRequiredProperties() - Method in class org.eaglei.model.EIInstanceMinimal

hasEmbeddedInstances() - Method in class org.eaglei.model.EIInstance

hasEquivalentClass() - Method in class org.eaglei.model.EIClass

Is there an EIEquivalentClass for this class.

hashCode() - Method in class org.eaglei.model.EIEntity

hashCode() - Method in class org.eaglei.model.EIResource

hashCode() - Method in class org.eaglei.model.EIURI

hasProperty() - Method in class org.eaglei.model.EIClass

hasReferencingResources() - Method in class org.eaglei.model.EIInstance

hasStubs() - Method in class org.eaglei.model.EIInstance

hasSubClass() - Method in class org.eaglei.model.EIClass

hasSuperClass() - Method in class org.eaglei.model.EIClass

Indicates whether this class has a superclass.

I

IAO_ALTERNATE_TERM_URI - Static variable in class org.eaglei.model.EIOntConstants

URI of the IAO alternate term annotation property

IAO_PREFERRED_TERM_URI - Static variable in class org.eaglei.model.EIOntConstants

URI of the IAO perferred term annotation property

IN_CLASS_GROUP - Static variable in class org.eaglei.model.EIOntConstants

URI of the annotation property used to mark class group.

IN_PROPERTY_GROUP - Static variable in class org.eaglei.model.EIOntConstants

URI of the annotation property used to mark property group.

IS_DELETED - Static variable in class org.eaglei.model.EIOntConstants

special :isDeleted predicate

isEagleIResource() - Method in class org.eaglei.model.EIClass

Returns true if this class is an eagle-i class (a top-level resource class or a subclass of a top-level class).

isEmbedded() - Method in class org.eaglei.model.EIBasicInstance

isEmbeddedInstance() - Method in class org.eaglei.model.EIInstance

isExtendedInstance() - Method in class org.eaglei.model.EIInstance

isInferred() - Method in class org.eaglei.model.EIClass

isModelClassURI(String) - Method in interface org.eaglei.model.EIOntModel

Determines if the given URI is recognized as being an eagle-i data model URI.

isPropertyValueAnEmbeddedInstance(EIEntity) - Method in class org.eaglei.model.EIInstance

Returns true if the property points to an embedded instance.

isPropertyValueAStub(EIEntity, EIEntity) - Method in class org.eaglei.model.EIInstance

isStub() - Method in class org.eaglei.model.EIInstance

isStub() - Method in class org.eaglei.model.EIInstanceMinimal

isSubClass(EIURI, EIURI) - Method in interface org.eaglei.model.EIOntModel

L

LOCATED_IN_URI - Static variable in class org.eaglei.model.EIOntConstants

URI for the located_in object property

LOCATION_OF_URI - Static variable in class org.eaglei.model.EIOntConstants

URI for the location_of object property

N

NO_DEFINITION - Static variable in class org.eaglei.model.EIOntResource

NO_LABEL - Static variable in class org.eaglei.model.EIEntity

NonOntologyProperties - Class in org.eaglei.model

NULL_CLASS - Static variable in class org.eaglei.model.EIClass

NULL_EIURI - Static variable in class org.eaglei.model.EIURI

NULL_ENTITY - Static variable in class org.eaglei.model.EIEntity

NULL_INSTANCE - Static variable in class org.eaglei.model.EIInstance

O

OBI_DEFINITION_URI - Static variable in class org.eaglei.model.EIOntConstants

URI of the OBI definition annotation property

org.eaglei.model - package org.eaglei.model

P

PG_ADMIN_DATA_GROUP - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_PROPERTY_GROUP annotation that indicates properties that hold administrative data.

PG_CONTACT_LOCATION - Static variable in class org.eaglei.model.EIOntConstants

Value used to identify properties that must be hidden by default when hiding mode is engaged

PG_DATA_MODEL_EXCLUDE - Static variable in class org.eaglei.model.EIOntConstants

Value of IN_PROPERTY_GROUP annotation that indicates properties that should be exposed for data collection.

PG_EMAIL_CONTACT - Static variable in class org.eaglei.model.EIOntConstants

Properties in this group name an email contact address for the subject, e.g.

PG_LAB_RELATED - Static variable in class org.eaglei.model.EIOntConstants

Properties that identify relationship with a lab

PG_PRIMARY - Static variable in class org.eaglei.model.EIOntConstants

Properties in this group are considered essential properties of a resource (should appear first in forms)

PG_RELATED_RESOURCE_PROVIDER - Static variable in class org.eaglei.model.EIOntConstants

Properties that identify a resource provider

R

RANGE_CONSTRAINT - Static variable in class org.eaglei.model.EIOntConstants

URI of annotation property that is used to specify a list of range URIs that should take precedence over the range list in the ontology model.

ReferencingResources - Class in org.eaglei.model

readOnly container associated with EIInstance.

ReferencingResources() - Constructor for class org.eaglei.model.ReferencingResources

removeEmbeddedInstance(EIEntity) - Method in class org.eaglei.model.EIInstance

replaceDatatypePropertyAllValues(EIEntity, Set<String>) - Method in class org.eaglei.model.EIBasicInstance

replaceDatatypePropertyAllValues(EIEntity, Set<String>) - Method in class org.eaglei.model.EIInstance

replaceDatatypePropertyValue(EIEntity, String, String) - Method in class org.eaglei.model.EIBasicInstance

replaceDatatypePropertyValue(EIEntity, String, String) - Method in class org.eaglei.model.EIInstance

replaceMaterializedInverseProperty(EIEntity, List<EIInstanceMinimal>) - Method in class org.eaglei.model.ReferencingResources

replaceNonOntologyLiteralProperty(EIEntity, String, String) - Method in class org.eaglei.model.EIInstance

replaceNonOntologyLiteralProperty(EIEntity, String, String) - Method in class org.eaglei.model.NonOntologyProperties

replaceNonOntologyLiteralPropertyAllValues(EIEntity, Set<String>) - Method in class org.eaglei.model.EIInstance

replaceNonOntologyLiteralPropertyAllValues(EIEntity, Set<String>) - Method in class org.eaglei.model.NonOntologyProperties

replaceNonOntologyResourcePropertyAllValues(EIEntity, Set<EIEntity>) - Method in class org.eaglei.model.EIInstance

replaceNonOntologyResourcePropertyAllValues(EIEntity, Set<EIEntity>) - Method in class org.eaglei.model.NonOntologyProperties

replaceNonOntologyResourcePropertyValue(EIEntity, EIURI, EIEntity) - Method in class org.eaglei.model.EIInstance

replaceNonOntologyResourcePropertyValue(EIEntity, EIURI, EIEntity) - Method in class org.eaglei.model.NonOntologyProperties

replaceObjectPropertyAllValues(EIEntity, Set<EIEntity>) - Method in class org.eaglei.model.EIBasicInstance

replaceObjectPropertyAllValues(EIEntity, Set<EIEntity>) - Method in class org.eaglei.model.EIInstance

replaceObjectPropertyValue(EIEntity, EIURI, EIEntity) - Method in class org.eaglei.model.EIBasicInstance

replaceObjectPropertyValue(EIEntity, EIURI, EIEntity) - Method in class org.eaglei.model.EIInstance

S

SearchEIInstancePreview - Class in org.eaglei.model

SearchEIInstancePreview(EIInstance) - Constructor for class org.eaglei.model.SearchEIInstancePreview

serialize(EIInstance, String) - Method in interface org.eaglei.model.EIInstanceFactory

Serialize an EInstance into an RDF language

serialVersionUID - Static variable in class org.eaglei.model.EIEntity

serialVersionUID - Static variable in class org.eaglei.model.EIURI

SERVICE_PROVIDED_BY_URI - Static variable in class org.eaglei.model.EIOntConstants

URI for the service_provided_by property

setAnnotations(Set<String>) - Method in class org.eaglei.model.EIClass

setAnnotations(Set<String>) - Method in class org.eaglei.model.EIProperty

setCreationDate(String) - Method in class org.eaglei.model.EIInstance

setCreationDate(String) - Method in class org.eaglei.model.EIInstanceMinimal

setCreationDate(String) - Method in class org.eaglei.model.NonOntologyProperties

setDataModelRootSuperClass(EIEntity) - Method in class org.eaglei.model.EIInstanceMinimal

setDefinition(String) - Method in class org.eaglei.model.EIOntResource

Sets a definition string for this class.

setEmbedded(boolean) - Method in class org.eaglei.model.EIBasicInstance

setEmbedded(boolean) - Method in class org.eaglei.model.EIInstance

setEquivalentClasses(List<EIEquivalentClass>) - Method in class org.eaglei.model.EIClass

setEquivalentTo(List<EIClass>) - Method in class org.eaglei.model.EIEquivalentClass

setHasAllRequiredProperties(boolean) - Method in class org.eaglei.model.EIBasicInstance

setHasAllRequiredProperties(boolean) - Method in class org.eaglei.model.EIInstance

setHasAllRequiredProperties(boolean) - Method in class org.eaglei.model.EIInstanceMinimal

setInstanceClass(EIClass) - Method in class org.eaglei.model.EIBasicInstance

setInstanceClass(EIClass) - Method in class org.eaglei.model.EIInstance

setInstanceLabel(String) - Method in class org.eaglei.model.EIBasicInstance

setInstanceLabel(String) - Method in class org.eaglei.model.EIInstance

setInstanceType(EIEntity) - Method in class org.eaglei.model.EIBasicInstance

setInstanceType(EIEntity) - Method in class org.eaglei.model.EIInstance

setInstanceType(EIEntity) - Method in class org.eaglei.model.EIInstanceMinimal

setInverseURI(String) - Method in class org.eaglei.model.EIObjectProperty

setIsStub(boolean) - Method in class org.eaglei.model.EIInstanceMinimal

setLab(EIEntity) - Method in class org.eaglei.model.EIInstanceMinimal

setLabel(String) - Method in class org.eaglei.model.EIEntity

setLabel(String) - Method in class org.eaglei.model.EIResource

setModificationDate(String) - Method in class org.eaglei.model.EIInstance

setModificationDate(String) - Method in class org.eaglei.model.NonOntologyProperties

setModifiedDate(String) - Method in class org.eaglei.model.EIInstanceMinimal

setOtherEITypes(List<EIEntity>) - Method in class org.eaglei.model.EIBasicInstance

setOtherEITypes(List<EIEntity>) - Method in class org.eaglei.model.EIInstance

setOtherEITypes(List<EIEntity>) - Method in class org.eaglei.model.EIInstanceMinimal

setProperties(List<EIProperty>) - Method in class org.eaglei.model.EIClass

setRange(EIClass) - Method in class org.eaglei.model.EIObjectProperty

This method is only here to support cache unmarshalling of this class.

setRange(List<EIClass>) - Method in class org.eaglei.model.EIObjectProperty

This method is only here to support cache unmarshalling of this class.

setReadOnlyLiteralProperties(Map<EIEntity, String>) - Method in class org.eaglei.model.EIInstance

setReadOnlyLiteralProperties(Map<EIEntity, String>) - Method in class org.eaglei.model.NonOntologyProperties

setReadOnlyLiteralProperty(EIEntity, String) - Method in class org.eaglei.model.EIInstance

setReadOnlyLiteralProperty(EIEntity, String) - Method in class org.eaglei.model.NonOntologyProperties

setReadOnlyResourceProperty(EIEntity, EIEntity) - Method in class org.eaglei.model.EIInstance

setReadOnlyResourceProperty(EIEntity, EIEntity) - Method in class org.eaglei.model.NonOntologyProperties

setReferencedByList(List<EIInstanceMinimal>) - Method in class org.eaglei.model.EIInstance

setReferencedByList(List<EIInstanceMinimal>) - Method in class org.eaglei.model.ReferencingResources

setRootSuperType(EIClass) - Method in class org.eaglei.model.EIBasicInstance

setRootSuperType(EIClass) - Method in class org.eaglei.model.EIInstance

setStubs(Set<EIEntity>) - Method in class org.eaglei.model.EIInstance

setSubClasses(List<EIClass>) - Method in class org.eaglei.model.EIClass

setSuperClass(EIClass) - Method in class org.eaglei.model.EIClass

setSuperClasses(List<EIClass>) - Method in class org.eaglei.model.EIClass

setURI(String) - Method in class org.eaglei.model.EIEquivalentClass

setValueRestriction(EIValueRestriction) - Method in class org.eaglei.model.EIProperty

setValueRestrictionMap(Map<String, EIValueRestriction>) - Method in class org.eaglei.model.EIClass

setWFOwner(EIEntity) - Method in class org.eaglei.model.EIInstance

setWFOwner(EIEntity) - Method in class org.eaglei.model.EIInstanceMinimal

setWFOwner(EIEntity) - Method in class org.eaglei.model.NonOntologyProperties

setWFState(EIEntity) - Method in class org.eaglei.model.EIInstance

setWFState(EIEntity) - Method in class org.eaglei.model.EIInstanceMinimal

setWFState(EIEntity) - Method in class org.eaglei.model.NonOntologyProperties

T

toString() - Method in class org.eaglei.model.EIBasicInstance

toString() - Method in class org.eaglei.model.EIEntity

toString() - Method in class org.eaglei.model.EIInstance

toString() - Method in class org.eaglei.model.EIInstanceMinimal

toString() - Method in class org.eaglei.model.EIResource

toString() - Method in class org.eaglei.model.EIURI

traverseDataModel(List<EIOntModel.Visitor>) - Method in interface org.eaglei.model.EIOntModel

Walks the entire eagle-i data model by starting with the set of "root resource" (top-level resource) classes and traversing through object property relationships and subclass relationships until every class and property in the data model has been visited.

U

URL_PROPERTY_URI - Static variable in class org.eaglei.model.EIOntConstants

USED_BY_URI - Static variable in class org.eaglei.model.EIOntConstants

URI for the used_by object property

V

valueOf(String) - Static method in enum org.eaglei.model.EIValueRestriction.Type

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.eaglei.model.EIValueRestriction.Type

Returns an array containing the constants of this enum type, in the order they are declared.

visit(EIClass, Deque<String>) - Method in interface org.eaglei.model.EIOntModel.Visitor

visit(EIProperty, Deque<String>) - Method in interface org.eaglei.model.EIOntModel.Visitor

A C D E F G H I L N O P R S T U V