A B C D E F G H I J L M N O P Q R S T U V W _

A

Access - Enum in org.eaglei.repository.model
Access control for the repository.
ACCESS_DATASET - Static variable in enum org.eaglei.repository.model.Access
 
AccessGrant - Class in org.eaglei.repository.model
Record class describing one "grant" of access to an entity in the repository.
ACTION - Static variable in class org.eaglei.repository.vocabulary.REPO
 
ACTION_PARAMETER - Static variable in class org.eaglei.repository.vocabulary.REPO
 
ActionMoveGraph - Class in org.eaglei.repository.model.workflow
Workflow action implementation that moves a resource instance to a new home graph.
ActionMoveGraph() - Constructor for class org.eaglei.repository.model.workflow.ActionMoveGraph
 
addGrant(HttpServletRequest, URI, URI, URI) - Static method in class org.eaglei.repository.model.AccessGrant
Add the specified grant to the instance.
addGrantAsAdministrator(HttpServletRequest, URI, URI, URI) - Static method in class org.eaglei.repository.model.AccessGrant
Add the specified grant to the instance, but WITHOUT cehcking for ADMIN access.
addGraph(DatasetImpl, URI) - Static method in class org.eaglei.repository.util.SPARQL
Add a single named graph explicitly to the dataset.
addGraphs(HttpServletRequest, DatasetImpl, View) - Static method in enum org.eaglei.repository.model.View
Add the named graphs composing a view to the specified dataset.
addRole(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.User
addRole - add a role
addRole(HttpServletRequest, Role) - Method in class org.eaglei.repository.model.User
addRole - add a role
addRoleAsAdministrator(HttpServletRequest, Role) - Method in class org.eaglei.repository.model.User
addRoleAsAdministrator - add a role WITHOUT access control checks
addWorkspaceGraphs(HttpServletRequest, DatasetImpl, URI) - Static method in enum org.eaglei.repository.model.View
Construct a "workspace" view based on a single named graph of type Workspace or Published which is expected to contain resource instances.
AGENT - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant AGENT
AGENT - Static variable in class org.eaglei.repository.vocabulary.FOAF
some useful Classes
AGENT - Static variable in class org.eaglei.repository.vocabulary.REPO
Agent class
AppendingRDFHandler - Class in org.eaglei.repository.util
RDF handler that appends the results of multiple parses into one "output" handler..
AppendingRDFHandler(RDFHandler) - Constructor for class org.eaglei.repository.util.AppendingRDFHandler
Constructor
assertClaim(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.workflow.Workflow
Establish a claim if allowed.
authenticate(String) - Method in interface org.eaglei.repository.auth.AuthUser
authentication test
authenticate(String) - Method in class org.eaglei.repository.auth.AuthUserTomcat
Separate method to test password, in case it's encrypted or something.
authenticate(String) - Method in class org.eaglei.repository.model.User
compare password (or credientals) without revealing anythign
Authentication - Class in org.eaglei.repository.auth
Authentication services: answer the question, "who am I, really?" and "do I have the Superuser role?".
authorizeExport(HttpServletRequest) - Method in class org.eaglei.repository.model.TransportAccessGrant
Check that current authenticated user is authorized for this operation; some export requests require Superuser privilege.
authorizeExport(HttpServletRequest) - Method in interface org.eaglei.repository.model.Transporter
Check that current authenticated user is authorized for this operation; some export requests require Superuser privilege.
authorizeExport(HttpServletRequest) - Method in class org.eaglei.repository.model.TransportRole
Check that current authenticated user is authorized for this operation; some export requests require Superuser privilege.
authorizeExport(HttpServletRequest) - Method in class org.eaglei.repository.model.TransportUser
Check that current authenticated user is authorized for this operation.
authorizeExport(HttpServletRequest) - Method in class org.eaglei.repository.model.workflow.TransportWorkflowTransition
Check that current authenticated user is authorized for this operation; some export requests require Superuser privilege.
authorizeImport(HttpServletRequest) - Method in class org.eaglei.repository.model.TransportAccessGrant
Check that current authenticated user is authorized for this operation; some import requests require Superuser privilege.
authorizeImport(HttpServletRequest) - Method in interface org.eaglei.repository.model.Transporter
Check that current authenticated user is authorized for this operation; some import requests require Superuser privilege.
authorizeImport(HttpServletRequest) - Method in class org.eaglei.repository.model.TransportRole
Check that current authenticated user is authorized for this operation; some import requests require Superuser privilege.
authorizeImport(HttpServletRequest) - Method in class org.eaglei.repository.model.TransportUser
Check that current authenticated user is authorized for this operation.
authorizeImport(HttpServletRequest) - Method in class org.eaglei.repository.model.workflow.TransportWorkflowTransition
Check that current authenticated user is authorized for this operation; some import requests require Superuser privilege.
AuthUser - Interface in org.eaglei.repository.auth
Outline of instance in pluggable authentication user database
AuthUserFactory - Interface in org.eaglei.repository.auth
Outline of factory for pluggable authentication user database.
AuthUserTomcat - Class in org.eaglei.repository.auth
Simple lightweight class to manage RDBMS authorization system users for the purpose of importing and exporting auth.
AuthUserTomcat(String, String, boolean) - Constructor for class org.eaglei.repository.auth.AuthUserTomcat
Constructor
AuthUserTomcatFactory - Class in org.eaglei.repository.auth
Simple lightweight class to manage RDBMS authorization system users for the purpose of importing and exporting auth.

B

BadRequestException - Exception in org.eaglei.repository.status
Signal a fatal runtime error that should result in a 400 (BAD REQUEST) status returned to the HTTP client.
BadRequestException(String) - Constructor for exception org.eaglei.repository.status.BadRequestException
Constructor for BadRequestException.
BadRequestException(String, Throwable) - Constructor for exception org.eaglei.repository.status.BadRequestException
Constructor for BadRequestException.
BadRequestException(Throwable) - Constructor for exception org.eaglei.repository.status.BadRequestException
Constructor for BadRequestException.
banner_jsp - Class in jsp.repository.admin
 
banner_jsp() - Constructor for class jsp.repository.admin.banner_jsp
 

C

clear(HttpServletRequest) - Method in class org.eaglei.repository.model.EditToken
Remove this edit token from the RDF DB.
clearLastModified(HttpServletRequest) - Method in class org.eaglei.repository.Lifecycle
Reset the double-buffered new value for the global "last modified" timestamp, in case a transaction gets rolled back.
collectionDeepToString(Collection<? extends Object>) - Static method in class org.eaglei.repository.util.Utils
Returns a string representation of the "deep contents" of the specified Collection, rendering each element with its toString().
commit() - Method in interface org.eaglei.repository.auth.AuthUser
Commit all changes to java model objects into actual DB (actual effect varies with implementation)
commit() - Method in class org.eaglei.repository.auth.AuthUserTomcat
Update auth DB entries if any values have changed.
commit(HttpServletRequest) - Method in class org.eaglei.repository.model.User
Commits any changes to RDF database *and* RDBMS.
commit(HttpServletRequest) - Method in class org.eaglei.repository.model.WritableObjectModel
commit - commit any changes made to this object (and any others).
commitLastModified(HttpServletRequest) - Method in class org.eaglei.repository.Lifecycle
Really Update the repo's global "last modified" timestamp to the cached double-buffered value.
commitMultiple(HttpServletRequest, Collection<? extends AuthUser>) - Method in interface org.eaglei.repository.auth.AuthUserFactory
Commit a group of modified (or created) entries, more efficient for use by import.
commitMultiple(HttpServletRequest, Collection<? extends AuthUser>) - Method in class org.eaglei.repository.auth.AuthUserTomcatFactory
Commit a group of modified (or created) entries, more efficient for use by import.
commitMultiple(HttpServletRequest, Collection<User>) - Static method in class org.eaglei.repository.model.User
Runs commit() on a batch of users at once for greater efficiency in imports.
compareTo(NamedGraph) - Method in class org.eaglei.repository.model.NamedGraph
compareTo(Object) - Method in class org.eaglei.repository.model.QueryMacro
compareTo(Object) - Method in class org.eaglei.repository.model.Role
compareTo(Object) - Method in class org.eaglei.repository.model.workflow.WorkflowState
Configuration - Class in org.eaglei.repository
This is a singleton class that manages configuration info.
ConflictException - Exception in org.eaglei.repository.status
Signal a fatal runtime error that should result in a 403 (Forbidden) status returned to the HTTP client.
ConflictException(String) - Constructor for exception org.eaglei.repository.status.ConflictException
Constructor for ConflictException.
ConflictException(String, Throwable) - Constructor for exception org.eaglei.repository.status.ConflictException
Constructor for ConflictException.
ConflictException(Throwable) - Constructor for exception org.eaglei.repository.status.ConflictException
Constructor for ConflictException.
contentTypeGetCharset(String, String) - Static method in class org.eaglei.repository.util.Utils
Extracts the character set specified with the content-type value.
contentTypeGetMIMEType(String) - Static method in class org.eaglei.repository.util.Utils
Extracts the MIME type specified with the content-type value.
CONTEXT_NTRIPLES - Static variable in class org.eaglei.repository.format.RDFContextNTriplesWriter
Constant CONTEXT_NTRIPLES
CONTEXT_NTRIPLES_MIME - Static variable in class org.eaglei.repository.format.RDFContextNTriplesWriter
Constant CONTEXT_NTRIPLES_MIME="text/x-rdf-context-ntriples"
contextDestroyed(ServletContextEvent) - Method in class org.eaglei.repository.servlet.RepositoryContextListener
Web app destruction hook from servlet container.
contextInitialized(ServletContextEvent) - Method in class org.eaglei.repository.servlet.RepositoryContextListener
Web app initialization hook from servlet container.
CONTRIBUTOR - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant CONTRIBUTOR
copyDataset(Dataset) - Static method in class org.eaglei.repository.util.SPARQL
Create copy of given Dataset with same default- and named-graph contents
copyStream(InputStream, OutputStream) - Static method in class org.eaglei.repository.util.Utils
The canonical file copy loop.
create() - Method in interface org.eaglei.repository.auth.AuthUser
Create entry for this model of a user in the auth database
create(String) - Method in interface org.eaglei.repository.auth.AuthUserFactory
Create a new auth user in the DB with indicated username.
create() - Method in class org.eaglei.repository.auth.AuthUserTomcat
Create a new user entry.
create(String) - Method in class org.eaglei.repository.auth.AuthUserTomcatFactory
Create a new auth user in the DB with indicated username.
create(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.EditToken
Create and return a new token for given resource.
create(HttpServletRequest, URI, String, String, boolean) - Static method in class org.eaglei.repository.model.Role
Make a new Role
create(HttpServletRequest, String, String) - Static method in class org.eaglei.repository.model.User
Create new user instance for given username.
create(HttpServletRequest, URI, String, String) - Static method in class org.eaglei.repository.model.User
Create new user instance for given username AND URI.
create(HttpServletRequest, URI, URI) - Static method in class org.eaglei.repository.model.workflow.Workflow
Create the workflow properties on a new resource instance.
create(HttpServletRequest, URI, String, String, URI, URI) - Static method in class org.eaglei.repository.model.workflow.WorkflowTransition
Make a new WorkflowTransition
createAsAdministrator(HttpServletRequest, String, String) - Static method in class org.eaglei.repository.model.User
Create new user instance for given username.
CREATED - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
--------------------- Useful Term URIs
CREATOR - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant CREATOR

D

DataModel - Enum in org.eaglei.repository.model
Access the configurable data model ontology.
DATAMODEL_SOURCE - Static variable in class org.eaglei.repository.Configuration
Contains URL of datamodel source within this webapp
DCTERMS - Class in org.eaglei.repository.vocabulary
Constants from the Dublin Core Terms (DCTERMS) namespace.
decache() - Static method in class org.eaglei.repository.model.NamedGraph
Invalidate the entire NG cache, called when RDF has changed.
decache() - Static method in enum org.eaglei.repository.model.NamedGraphType
Invalidate the NGT cache, called when RDF has changed.
decache() - Static method in class org.eaglei.repository.model.Role
Invalidate the role cache, called when RDF has changed.
decache() - Static method in class org.eaglei.repository.model.workflow.WorkflowState
Invalidate any in-memory cache of RDF data.
decache() - Static method in class org.eaglei.repository.servlet.Disseminate
Invalidate any in-memory cache of RDF data.
decacheAll() - Static method in class org.eaglei.repository.Lifecycle
Call the decache() method of all classes with the HasContentCache annotation.
decacheAuthentication(HttpServletRequest, User) - Static method in class org.eaglei.repository.auth.Authentication
Invalidate the cached authenticated User if it matches the one that was modified by the User API.
decacheInstance() - Method in class org.eaglei.repository.model.NamedGraph
Invalidate local cache after changes to RDF.
decacheInstance() - Method in class org.eaglei.repository.model.Role
any decache of an instance should decache global map too.
decacheInstance() - Method in class org.eaglei.repository.model.WritableObjectModel
Invalidate local cache after changes.
delete() - Method in interface org.eaglei.repository.auth.AuthUser
Obliterate all record of this authentication user
delete() - Method in class org.eaglei.repository.auth.AuthUserTomcat
Flag this user for deletion upon commit.
delete(HttpServletRequest) - Method in class org.eaglei.repository.model.Role
destroy a role
delete(HttpServletRequest) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Obliterate all trace of this transition.
destroy(ServletContext) - Method in class org.eaglei.repository.Lifecycle
destroy - shut down this application and release resources.
destroy() - Method in class org.eaglei.repository.util.WithRepositoryConnection
destroy
disable() - Method in class org.eaglei.repository.model.User
Remove ability to login with credentials
Disseminate - Class in org.eaglei.repository.servlet
Dissemination of the content for an Eagle-I Resource representation instance.
Disseminate() - Constructor for class org.eaglei.repository.servlet.Disseminate
 
doExport(HttpServletRequest, HttpServletResponse, RDFFormat, Set<String>, Set<String>) - Method in class org.eaglei.repository.model.TransportAccessGrant
Export description of access grants as serialized RDF quads.
doExport(HttpServletRequest, HttpServletResponse, RDFFormat, Set<String>, Set<String>) - Method in interface org.eaglei.repository.model.Transporter
Serializes the selected objects to the HTTP response.
doExport(HttpServletRequest, HttpServletResponse, RDFFormat, Set<String>, Set<String>) - Method in class org.eaglei.repository.model.TransportRole
Export roles to serialized quad format.
doExport(HttpServletRequest, HttpServletResponse, RDFFormat, Set<String>, Set<String>) - Method in class org.eaglei.repository.model.TransportUser
Export description of user accounts to serialized RDF quads.
doExport(HttpServletRequest, HttpServletResponse, RDFFormat, Set<String>, Set<String>) - Method in class org.eaglei.repository.model.workflow.TransportWorkflowTransition
Export transitions to serialized quad format.
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.eaglei.repository.util.WithRepositoryConnection
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Disseminate
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Graph
GET the contents of a graph Query Args: - name = URI of graph, required (can be "all") - format = MIME type (overrides content-type) - inferred -- flag, if present, include inferred triples - force -- secret option, if set, allows use of non-quad format with ALL Result: HTTP status 200 for success, 400 or 4xx or 5xx otherwise.
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Harvest
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.ImportExport
GET the contents of a graph - for EXPORT only Query Args: - format = MIME type (overrides content-type) - view = view to query (mutually excl.
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Internal
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.ListGraphs
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Model
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.SparqlProtocol
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WhoAmI
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WorkflowResources
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WorkflowTransitions
doImport(HttpServletRequest, HttpServletResponse, RepositoryConnection, Set<String>, Set<String>, DuplicateArg, boolean, boolean) - Method in class org.eaglei.repository.model.TransportAccessGrant
Import description of access grants from serialized RDF quads.
doImport(HttpServletRequest, HttpServletResponse, RepositoryConnection, Set<String>, Set<String>, DuplicateArg, boolean, boolean) - Method in interface org.eaglei.repository.model.Transporter
 
doImport(HttpServletRequest, HttpServletResponse, RepositoryConnection, Set<String>, Set<String>, DuplicateArg, boolean, boolean) - Method in class org.eaglei.repository.model.TransportRole
Import description of roles from serialized RDF quads.
doImport(HttpServletRequest, HttpServletResponse, RepositoryConnection, Set<String>, Set<String>, DuplicateArg, boolean, boolean) - Method in class org.eaglei.repository.model.TransportUser
Import description of user accounts from serialized RDF quads.
doImport(HttpServletRequest, HttpServletResponse, RepositoryConnection, Set<String>, Set<String>, DuplicateArg, boolean, boolean) - Method in class org.eaglei.repository.model.workflow.TransportWorkflowTransition
Import description of transitions from serialized RDF quads.
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.admin.UpdateGrants
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.admin.UpdateNamedGraph
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.admin.UpdateRole
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.admin.UpdateTransition
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.admin.UpdateUser
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Disseminate
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.EmailContact
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Graph
POST or PUT the contents of a graph Query Args: - name = URI of graph, required (can be "all") - action = (add|replace|delete) - required, how to process triples - format = MIME type (overrides content-type) - uri = remote URL from which to obtain serialization - content = immediate serlialized RDF content to load - label = new value for rdfs:label property - type = NamedGraphType to record in metadata (ontology, metadata, etc..) Result: HTTP status 200 for success, 400 or 4xx or 5xx otherwise.
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Harvest
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.ImportExport
Import a collection of Users *or* Instances from an export serialization generated by this service.
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Internal
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.ListGraphs
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Model
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.New
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.SparqlProtocol
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Update
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WhoAmI
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WorkflowClaim
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WorkflowPush
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WorkflowRelease
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WorkflowResources
doPost(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.WorkflowTransitions
doPut(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.Graph
PUT the contents of a graph Query Args: - name = URI of graph, required (can be "all") - action = (add|replace|delete) - required, how to process triples - format = MIME type (overrides content-type) - uri = remote URL from which to obtain serialization - (PUT content is seralized RDF) Result: HTTP status 200 for success, 400 or 4xx or 5xx otherwise.
DuplicateArg - Enum in org.eaglei.repository.util
Enumerated values of the 'duplicate' service parameter.

E

editGrants_jsp - Class in jsp.repository.admin
 
editGrants_jsp() - Constructor for class jsp.repository.admin.editGrants_jsp
 
editGraph_jsp - Class in jsp.repository.admin
 
editGraph_jsp() - Constructor for class jsp.repository.admin.editGraph_jsp
 
editRole_jsp - Class in jsp.repository.admin
 
editRole_jsp() - Constructor for class jsp.repository.admin.editRole_jsp
 
EditToken - Class in org.eaglei.repository.model
Object Model for "edit token", an RDF construct used to regulate access to updating a resource instance.
editTransition_jsp - Class in jsp.repository.admin
 
editTransition_jsp() - Constructor for class jsp.repository.admin.editTransition_jsp
 
editUserPortlet_jsp - Class in jsp.repository.admin
 
editUserPortlet_jsp() - Constructor for class jsp.repository.admin.editUserPortlet_jsp
 
EmailContact - Class in org.eaglei.repository.servlet
Method: POST only.
EmailContact() - Constructor for class org.eaglei.repository.servlet.EmailContact
 
endQueryResult() - Method in class org.eaglei.repository.format.SPARQLHTMLWriter
endQueryResult
endQueryResult() - Method in class org.eaglei.repository.format.SPARQLTextWriter
Finish streaming result
endRDF() - Method in class org.eaglei.repository.format.RDFContextNTriplesWriter
endRDF
endRDF() - Method in class org.eaglei.repository.format.RDFHTMLWriter
endRDF
endRDF() - Method in class org.eaglei.repository.util.AppendingRDFHandler
equals(Object) - Method in class org.eaglei.repository.auth.AuthUserTomcat
equals(Object) - Method in class org.eaglei.repository.model.EditToken
equals(Object) - Method in class org.eaglei.repository.model.NamedGraph
Consider two NGs equal if the names are equal, never mind the metadata.
equals(Object) - Method in class org.eaglei.repository.model.QueryMacro
equals(Object) - Method in class org.eaglei.repository.model.Role
equals(Object) - Method in class org.eaglei.repository.model.User
Equality is defined as EITHER URI or uesrname equal -since some instances may not have a URI at first but always(?) have a username
equals(Object) - Method in class org.eaglei.repository.model.workflow.WorkflowState
equals(Object) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Transitions are equal if their subject URI is the same.
error_jsp - Class in jsp.repository.admin
 
error_jsp() - Constructor for class jsp.repository.admin.error_jsp
 
ErrorAction - Class in org.eaglei.repository.model.workflow
This is a marker class.
ErrorAction() - Constructor for class org.eaglei.repository.model.workflow.ErrorAction
Default Constructor
ErrorAction(String) - Constructor for class org.eaglei.repository.model.workflow.ErrorAction
Constructor, with error message
ErrorSendingException - Exception in org.eaglei.repository.status
Superclass for exceptions that get turned into HTTP status codes in the response by a servlet wrapper class.
ErrorSendingException(String) - Constructor for exception org.eaglei.repository.status.ErrorSendingException
Constructor for ErrorSendingException.
ErrorSendingException(String, Throwable) - Constructor for exception org.eaglei.repository.status.ErrorSendingException
Constructor for ErrorSendingException.
ErrorSendingException(Throwable) - Constructor for exception org.eaglei.repository.status.ErrorSendingException
Constructor for ErrorSendingException.
escapeHTMLAttribute(String) - Static method in class org.eaglei.repository.util.Utils
Escape a character string for HTML or XML attribute value: (assumes you're using double-quotes to delineate the value) 1.
evaluate(ValueFactory, Value...) - Method in class org.eaglei.repository.util.UpperCaseStr
Evaluate the function; returns upper case version of given string.
evaluateBooleanQuery(String, BooleanQuery) - Static method in class org.eaglei.repository.util.SPARQL
Instrumented wrapper for RepositoryConnection.evaluate()
evaluateGraphQuery(String, GraphQuery) - Static method in class org.eaglei.repository.util.SPARQL
Instrumented wrapper for RepositoryConnection.evaluate()
evaluateGraphQuery(String, GraphQuery, RDFHandler) - Static method in class org.eaglei.repository.util.SPARQL
Instrumented wrapper for RepositoryConnection.evaluate()
evaluateTupleQuery(String, TupleQuery) - Static method in class org.eaglei.repository.util.SPARQL
Instrumented wrapper for RepositoryConnection.evaluate()
evaluateTupleQuery(String, TupleQuery, TupleQueryResultHandler) - Static method in class org.eaglei.repository.util.SPARQL
Instrumented wrapper for RepositoryConnection.evaluate()
exportGrants(URI, Iterable<AccessGrant>) - Static method in class org.eaglei.repository.model.AccessGrant
Translate internal grant objects into exportable statements on a given subject.

F

filter(String) - Static method in class org.eaglei.repository.util.HTMLFilter
Filter the specified message string for characters that are sensitive in HTML.
filterByPermission(HttpServletRequest, URI, String, String, String, Access, Dataset, BindingSet, TupleQueryResultHandler) - Static method in enum org.eaglei.repository.model.Access
Filters results of query by what the current user has indicated permission on..
FINAL - Static variable in class org.eaglei.repository.vocabulary.REPO
 
finalize() - Method in class org.eaglei.repository.model.User
finalize - flag error if GC'ing a dirty instance, its changes are lost.
find(String) - Method in interface org.eaglei.repository.auth.AuthUserFactory
Get the auth-db description of the indicated user, if present.
find(String) - Method in class org.eaglei.repository.auth.AuthUserTomcatFactory
Get the auth-db description of the indicated user, if present.
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.EditToken
Return current edit token if any, or null if not found.
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.ImmutableObjectModel
Get an instance of the object model whose subject is the given URI.
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.NamedGraph
Returns a named graph object, or null if this is not a valid named graph OR context.
find(HttpServletRequest, URI) - Static method in enum org.eaglei.repository.model.NamedGraphType
Get NGT from the fixed map, we do not expect to update the ontology.
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.QueryMacro
Not implemented, no need to get one macro
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.Role
Get the Role for given URI, lookup label.
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.User
Find a user record by URI; Returns null if NOT found..
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.workflow.Workflow
sort of constructor.
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.workflow.WorkflowState
Get the WorkflowState for given URI, lookup label.
find(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.workflow.WorkflowTransition
Get the WorkflowTransition for a known URI,
findAccessibleByAttributes(HttpServletRequest, URI, URI, URI, URI) - Static method in class org.eaglei.repository.model.workflow.WorkflowTransition
Get all Transitions matching criteria dictated by args; null is a wildcard, so all nulls means get all transactions.
findAll(HttpServletRequest) - Static method in class org.eaglei.repository.model.ImmutableObjectModel
Gets List of object models for _all_ instances of the class found in the repository.
findAll(HttpServletRequest) - Static method in class org.eaglei.repository.model.NamedGraph
Get an iterable collection of all known named graphs AND Contexts.
findAll(HttpServletRequest) - Static method in enum org.eaglei.repository.model.NamedGraphType
Get list of all types.
findAll(HttpServletRequest) - Static method in class org.eaglei.repository.model.QueryMacro
Get all macros
findAll(HttpServletRequest) - Static method in class org.eaglei.repository.model.Role
Get all known Roles - includes pseudo-Roles Anonymous and Authenticated that should NOT be directly assigned to Users.
findAll(HttpServletRequest) - Static method in class org.eaglei.repository.model.User
Get all known Users from RDF DB - may not match auth'n DB.
findAll(HttpServletRequest) - Static method in class org.eaglei.repository.model.workflow.WorkflowState
Get all known States -- we expect them to be stable, hence read-only.
findAll(HttpServletRequest) - Static method in class org.eaglei.repository.model.workflow.WorkflowTransition
Get all Transitions in an aesthetic order
findAllAsMap() - Method in interface org.eaglei.repository.auth.AuthUserFactory
Get a Map of each username key to AuthUserTomcat object.
findAllAsMap() - Method in class org.eaglei.repository.auth.AuthUserTomcatFactory
Get a Map of each username key to AuthUserTomcat object.
findAllGrantable(HttpServletRequest) - Static method in class org.eaglei.repository.model.Role
Get all Roles that can be granted in a :has___Access statement.
findAllUserRoles(HttpServletRequest) - Static method in class org.eaglei.repository.model.Role
Get all Roles that ought to be assigned to users - EXCLUDES "implicit" pseudo-Roles Anonymous and Authenticated.
findByUsername(HttpServletRequest, String) - Static method in class org.eaglei.repository.model.User
find a record by username, i.e.
findOrCreate(HttpServletRequest, URI, boolean) - Static method in class org.eaglei.repository.model.NamedGraph
Returns a named graph object, or null if this is not a valid named graph OR context and createp was false.
finishInitialize() - Method in class org.eaglei.repository.Lifecycle
finishInitialize - setup at construct time
FIRST_NAME - Static variable in class org.eaglei.repository.vocabulary.FOAF
some useful properties
flag - Variable in class org.eaglei.repository.rid.RIDGenerator
 
flush(Connection) - Method in class org.eaglei.repository.auth.AuthUserTomcat
Do the actual work to update auth DB entries if any values have changed.
FOAF - Class in org.eaglei.repository.vocabulary
Constants from the FOAF vocabulary URIs of useful classes and properties.
ForbiddenException - Exception in org.eaglei.repository.status
Signal a fatal runtime error that should result in a 403 (Forbidden) status returned to the HTTP client.
ForbiddenException(String) - Constructor for exception org.eaglei.repository.status.ForbiddenException
Constructor for ForbiddenException.
ForbiddenException(String, Throwable) - Constructor for exception org.eaglei.repository.status.ForbiddenException
Constructor for ForbiddenException.
ForbiddenException(Throwable) - Constructor for exception org.eaglei.repository.status.ForbiddenException
Constructor for ForbiddenException.
FORMAT - Static variable in class org.eaglei.repository.format.RDFHTMLWriter
Constant FORMAT
FORMAT - Static variable in class org.eaglei.repository.format.SPARQLTextWriter
Constant FORMAT describes this format
Formats - Class in org.eaglei.repository.util
This is a static utility class containing constants and utility methods related to ALL formats for input and output data; this includes RDF serialization as well as Boolean and Tuple query results.

G

get(ServletRequest) - Static method in class org.eaglei.repository.util.WithRepositoryConnection
Gets RepositoryConnection from where the filter stashed it.
getAccessLabel() - Method in class org.eaglei.repository.model.AccessGrant
consolidated getter
getAccessURI() - Method in class org.eaglei.repository.model.AccessGrant
consolidated getter
getAction() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for action
getActionParameter() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for action parameter
getAgentLabel() - Method in class org.eaglei.repository.model.AccessGrant
consolidated getter
getAgentTypeLabel() - Method in class org.eaglei.repository.model.AccessGrant
consolidated getter
getAgentTypeURI() - Method in class org.eaglei.repository.model.AccessGrant
consolidated getter
getAgentURI() - Method in class org.eaglei.repository.model.AccessGrant
consolidated getter
getAllWorkspaceGraphs(HttpServletRequest) - Static method in enum org.eaglei.repository.model.View
Returns map loaded with name and graph-URI of all named graphs of type workspace or pubilshed.
getArrayOfString() - Method in enum org.eaglei.repository.model.DataModel
Getter for multiple configured values, returns as string form
getArrayOfURI() - Method in enum org.eaglei.repository.model.DataModel
Getter for multiple configured values
getAuthenticatedUsername(HttpServletRequest) - Static method in class org.eaglei.repository.auth.Authentication
Get the current authenticated username from container or other auth'n.
getAuthType() - Method in class org.eaglei.repository.model.User
Get the URI identifying the kind of authorization behind this user, needed for export and import.
getBranch() - Method in class org.eaglei.repository.Configuration
Get the source SCM branch, if any.
getComment() - Method in class org.eaglei.repository.model.Role
Getter for the field comment.
getComment() - Method in class org.eaglei.repository.model.workflow.WorkflowState
Getter for the field comment.
getComment() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for the field comment.
getConfigurationProperty(String) - Method in class org.eaglei.repository.Configuration
getConfigurationProperty
getConfigurationProperty(String, String) - Method in class org.eaglei.repository.Configuration
return default if there is no value for the indicated property.
getConfigurationPropertyArray(String, String[]) - Method in class org.eaglei.repository.Configuration
Gets a configuration property with multiple values, returned in an array.
getConfigurationPropertyAsBoolean(String, boolean) - Method in class org.eaglei.repository.Configuration
return boolean value of a config property
getConfigurationPropertyAsInt(String, int) - Method in class org.eaglei.repository.Configuration
return integer value of a config property
getConnection() - Static method in class org.eaglei.repository.auth.AuthUserTomcatFactory
Get a jdbc Connection to the authentication RDBMS Has to be public so AuthUserTomcat can use it.
getConnection() - Method in class org.eaglei.repository.inferencer.MinimalInferencer
getCreated() - Method in class org.eaglei.repository.model.EditToken
Getter for the field created.
getCreator() - Method in class org.eaglei.repository.model.EditToken
Getter for the field creator.
getCreatorLabel() - Method in class org.eaglei.repository.model.EditToken
Getter for the field creatorLabel.
getDefaultNamespace() - Method in class org.eaglei.repository.Configuration
Get value of default namespace prefix for URIs created by the repository.
getDependants() - Method in class jsp.index_jsp
 
getDependants() - Method in class jsp.repository.admin.banner_jsp
 
getDependants() - Method in class jsp.repository.admin.editGrants_jsp
 
getDependants() - Method in class jsp.repository.admin.editGraph_jsp
 
getDependants() - Method in class jsp.repository.admin.editRole_jsp
 
getDependants() - Method in class jsp.repository.admin.editTransition_jsp
 
getDependants() - Method in class jsp.repository.admin.editUserPortlet_jsp
 
getDependants() - Method in class jsp.repository.admin.error_jsp
 
getDependants() - Method in class jsp.repository.admin.index_jsp
 
getDependants() - Method in class jsp.repository.admin.memory_002dreport_jsp
 
getDependants() - Method in class jsp.repository.admin.namedGraphs_jsp
 
getDependants() - Method in class jsp.repository.admin.roles_jsp
 
getDependants() - Method in class jsp.repository.admin.transitions_jsp
 
getDependants() - Method in class jsp.repository.admin.users_jsp
 
getDependants() - Method in class jsp.repository.contact.index_jsp
 
getDependants() - Method in class jsp.repository.head_jsp
 
getDependants() - Method in class jsp.repository.logout.index_jsp
 
getDependants() - Method in class jsp.repository.query.index_jsp
 
getDependants() - Method in class jsp.repository.version.index_jsp
 
getExactParameter(HttpServletRequest, String, boolean) - Method in class org.eaglei.repository.servlet.RepositoryServlet
Get a plain string parameter, including empty or whitespace string.
getField(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.Provenance
getField - get the value of a provenance predicate.
getFinal() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for final transition uri
getFinalLabel() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for label of final transition
getFirstName() - Method in class org.eaglei.repository.model.User
Getter for the field firstName.
getGrants(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.AccessGrant
Find all grants on the given subject URI
getGraphInitFile(URI) - Static method in class org.eaglei.repository.Lifecycle
Get the init file (relative resource path) for given graph URI.
getHomeDirectory() - Method in class org.eaglei.repository.Configuration
getHomeDirectory - get configured repository home directory.
getHomeGraph() - Method in class org.eaglei.repository.model.workflow.Workflow
Getter.
getHomeGraph(RepositoryConnection, URI) - Static method in class org.eaglei.repository.util.Utils
Get a resource instance's home graph, ideally where its *asserted* rdf:type statements live - inferred types don't count.
getIDSequence(int) - Method in class org.eaglei.repository.rid.RIDGenerator
getIDSequence
getInitFileVersion(URI) - Static method in class org.eaglei.repository.Lifecycle
Gets the version that would be set by loading the RDF from given init file; this is the value of owl:versionInfo on the given URI, if any, in the serialized RDF fiel found on resourcePath.
getInitial() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for initial transition
getInitialLabel() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for label of initial transition
getInstance() - Static method in class org.eaglei.repository.auth.AuthUserTomcatFactory
Getter for singleton.
getInstance() - Static method in class org.eaglei.repository.Configuration
Get the singleton instance.
getInstance() - Static method in class org.eaglei.repository.inferencer.TBoxInferencer
Get the singleton instance.
getInstance() - Static method in class org.eaglei.repository.Lifecycle
Get the singleton instance.
getInstance() - Static method in class org.eaglei.repository.rid.RIDGenerator
getInstance
getInternalAndMetadataGraphs(HttpServletRequest) - Static method in class org.eaglei.repository.util.SPARQL
Get a Dataset including all Internal and Metadata named graphs
getLabel() - Method in class org.eaglei.repository.model.EditToken
Get human-readable, textual representation of the object.
getLabel() - Method in class org.eaglei.repository.model.ImmutableObjectModel
Get a human-readable text string appropriate to label this instance in e.g.
getLabel() - Method in class org.eaglei.repository.model.NamedGraph
Getter for the field label.
getLabel() - Method in enum org.eaglei.repository.model.NamedGraphType
Get pretty title to include in e.g.
getLabel() - Method in class org.eaglei.repository.model.QueryMacro
Getter for label
getLabel() - Method in class org.eaglei.repository.model.Role
Getter for the field label.
getLabel() - Method in class org.eaglei.repository.model.User
Computes the most informative "label" for a user, to present in UI.
getLabel() - Method in enum org.eaglei.repository.model.View
Getter for the field label.
getLabel() - Method in class org.eaglei.repository.model.workflow.WorkflowState
Getter for the field label.
getLabel() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for the field label.
getLastModified() - Method in class org.eaglei.repository.Lifecycle
Gets the most recent "last modified" timestamp applied to provenance metadata.
getLastName() - Method in class org.eaglei.repository.model.User
Getter for the field lastName.
getMacro() - Method in class org.eaglei.repository.model.QueryMacro
Getter for macro content
getMavenVersionFromJar(String) - Static method in class org.eaglei.repository.util.Utils
Get the Maven version string, if available, from a resource URL containing a Jar archive.
getMbox() - Method in class org.eaglei.repository.model.User
Getter for the field mbox.
getMessage() - Method in class org.eaglei.repository.model.workflow.ErrorAction
Getter for message
getMyGrants(HttpServletRequest, URI) - Static method in class org.eaglei.repository.model.AccessGrant
Find all grants on the given subject URI pertaining to current authenticated user.
getOrder() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
getter for order
getOwner() - Method in class org.eaglei.repository.model.workflow.Workflow
Getter.
getParameter(HttpServletRequest, String, boolean) - Method in class org.eaglei.repository.servlet.RepositoryServlet
Get a plain string parameter, AND turn empty string into null.
getParameterAsBoolean(HttpServletRequest, String, boolean, boolean) - Method in class org.eaglei.repository.servlet.RepositoryServlet
XXX needs javadoc
getParameterAsKeyword(HttpServletRequest, String, Class, Enum, boolean) - Method in class org.eaglei.repository.servlet.RepositoryServlet
XXX needs javadoc
getParameterAsReader(HttpServletRequest, String, boolean) - Method in class org.eaglei.repository.servlet.RepositoryServlet
returns Reader on stream param or none if not there XXX needs javadoc
getParameterAsURI(HttpServletRequest, String, boolean) - Method in class org.eaglei.repository.servlet.RepositoryServlet
XXX needs javadoc
getParameterContentType(HttpServletRequest, String) - Method in class org.eaglei.repository.servlet.RepositoryServlet
returns contnet-type of stream param or none if not there XXX needs javadoc
getParameters(HttpServletRequest, String, boolean) - Method in class org.eaglei.repository.servlet.RepositoryServlet
Get multiple params, return null for no params XXX needs javadoc
getPassword() - Method in interface org.eaglei.repository.auth.AuthUser
Getter for password
getPassword() - Method in class org.eaglei.repository.auth.AuthUserTomcat
Getter
getPassword() - Method in class org.eaglei.repository.model.User
Getter for password.
getPersonalName() - Method in class org.eaglei.repository.model.User
Get personal name, if available, as "firstname lastname".
getPrincipalURI(HttpServletRequest) - Static method in class org.eaglei.repository.auth.Authentication
Find the URI of the :Person object for the current authenticated user, if there is any.
getPrincipalUser(HttpServletRequest) - Static method in class org.eaglei.repository.auth.Authentication
Find a User object for the current authenticated user, if one is available.
getProjectVersion() - Method in class org.eaglei.repository.Configuration
Get the Maven project version
getRDFFormat() - Method in class org.eaglei.repository.format.RDFContextNTriplesWriter
getRDFFormat
getRDFFormat() - Method in class org.eaglei.repository.format.RDFContextNTriplesWriterFactory
getRDFFormat
getRDFFormat() - Method in class org.eaglei.repository.format.RDFHTMLWriter
getRDFFormat
getRDFFormat() - Method in class org.eaglei.repository.format.RDFHTMLWriterFactory
getRDFFormat
getRDFOutputFormatForMIMEType(String) - Static method in class org.eaglei.repository.util.Formats
Find RDFFormat which has a writer that generates the given MIME type.
getResource() - Method in class org.eaglei.repository.model.EditToken
Gets resource instance of edit token
getRevision() - Method in class org.eaglei.repository.Configuration
Get the source revision, e.g.
getSesameDirectory() - Method in class org.eaglei.repository.Configuration
Return the directory (creating it if necessary) for Sesame NativeStore files.
getSesameRepository() - Method in class org.eaglei.repository.Lifecycle
getSesameRepository
getSesameVersion() - Method in class org.eaglei.repository.Configuration
Get version of Sesame triplestore libraries
getSize(HttpServletRequest) - Method in class org.eaglei.repository.model.NamedGraph
Return the number of non-inferred statements in the named graph.
getState() - Method in class org.eaglei.repository.model.workflow.Workflow
Getter.
getStatus() - Method in exception org.eaglei.repository.status.BadRequestException
getStatus
getStatus() - Method in exception org.eaglei.repository.status.ConflictException
getStatus
getStatus() - Method in exception org.eaglei.repository.status.ErrorSendingException
getStatus
getStatus() - Method in exception org.eaglei.repository.status.ForbiddenException
getStatus
getStatus() - Method in exception org.eaglei.repository.status.HttpStatusException
Getter for the field status.
getStatus() - Method in exception org.eaglei.repository.status.InternalServerErrorException
getStatus
getStatus() - Method in exception org.eaglei.repository.status.NotAcceptableException
getStatus
getStatus() - Method in exception org.eaglei.repository.status.NotFoundException
getStatus
getString() - Method in enum org.eaglei.repository.model.DataModel
Getter for the string form of a configured scalar value.
getTBoxGraphs() - Method in class org.eaglei.repository.inferencer.TBoxInferencer
Accessor for TBox graph set
getTimestamp() - Method in class org.eaglei.repository.Configuration
Get the time when this software version was built Depends on the build properties file left in place by maven.
getTitle() - Method in enum org.eaglei.repository.model.View
getTitle - get pretty title to e.g.
getTransporter() - Method in enum org.eaglei.repository.servlet.ImportExport.TypeArg
Getter for transporter
getTupleQueryResultFormat() - Method in class org.eaglei.repository.format.SPARQLHTMLWriter
getTupleQueryResultFormat
getTupleQueryResultFormat() - Method in class org.eaglei.repository.format.SPARQLHTMLWriterFactory
getTupleQueryResultFormat
getTupleQueryResultFormat() - Method in class org.eaglei.repository.format.SPARQLTextWriter
Get description of format
getTupleQueryResultFormat() - Method in class org.eaglei.repository.format.SPARQLTextWriterFactory
getTupleQueryResultFormat
getType() - Method in interface org.eaglei.repository.auth.AuthUserFactory
get the URI identifying this AuthUser implementation.
getType() - Method in class org.eaglei.repository.auth.AuthUserTomcatFactory
get the URI identifying this AuthUser implementation.
getType() - Method in class org.eaglei.repository.model.NamedGraph
Getter for the field type.
getTypeLabel() - Method in class org.eaglei.repository.model.NamedGraph
Getter for the field typeLabel.
getTypeURI() - Method in class org.eaglei.repository.model.NamedGraph
Getter for the field type, but returns URI form.
getURI() - Method in enum org.eaglei.repository.model.Access
Get the URI referenced by this access type.
getURI() - Method in enum org.eaglei.repository.model.DataModel
Getter for configured URI for this value.
getURI() - Method in class org.eaglei.repository.model.EditToken
getURI - gets URI of edit token itself
getURI() - Method in class org.eaglei.repository.model.ImmutableObjectModel
Get the subject URI taht created this instance.
getURI() - Method in class org.eaglei.repository.model.NamedGraph
Getter for the field name.
getURI() - Method in enum org.eaglei.repository.model.NamedGraphType
Accessor
getURI() - Method in class org.eaglei.repository.model.QueryMacro
not really implemented
getURI() - Method in class org.eaglei.repository.model.Role
getURI
getURI() - Method in class org.eaglei.repository.model.User
Getter for the field uri.
getURI() - Method in class org.eaglei.repository.model.workflow.Workflow
Getter.
getURI() - Method in class org.eaglei.repository.model.workflow.WorkflowState
getURI
getURI() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
getURI - getter
getURI() - Method in class org.eaglei.repository.util.UpperCaseStr
Get name of this function as a URI
getUsername() - Method in interface org.eaglei.repository.auth.AuthUser
Getter for username
getUsername() - Method in class org.eaglei.repository.auth.AuthUserTomcat
Getter
getUsername() - Method in class org.eaglei.repository.model.User
Getter for the field username.
getVersionInfo(RepositoryConnection, URI, URI) - Static method in class org.eaglei.repository.util.Utils
Get the owl:versionInfo value (as String) for the given subject and named graph.
getWebappResourceAsReader(String) - Method in class org.eaglei.repository.Lifecycle
Read a resource file out of the webapp, path is relative to webapp root and MUST NOT begin with '/' -- e.g.
getWorkspace() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for field workspace
getWorkspaceLabel() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Getter for field workspaceLabel
getWriter(OutputStream) - Method in class org.eaglei.repository.format.RDFContextNTriplesWriterFactory
getWriter(Writer) - Method in class org.eaglei.repository.format.RDFContextNTriplesWriterFactory
getWriter
getWriter(OutputStream) - Method in class org.eaglei.repository.format.RDFHTMLWriterFactory
getWriter(Writer) - Method in class org.eaglei.repository.format.RDFHTMLWriterFactory
getWriter
getWriter(OutputStream) - Method in class org.eaglei.repository.format.SPARQLHTMLWriterFactory
getWriter(OutputStream) - Method in class org.eaglei.repository.format.SPARQLTextWriterFactory
Graph - Class in org.eaglei.repository.servlet
Load and dump named graphs <-> serialized RDF.
Graph() - Constructor for class org.eaglei.repository.servlet.Graph
 
Graph.Action - Enum in org.eaglei.repository.servlet
 

H

HandlerBadRequest - Exception in org.eaglei.repository.util
Marker class so a Sesame tuple query result handler can signal "bad request" back up to the calling code.
HandlerBadRequest(String) - Constructor for exception org.eaglei.repository.util.HandlerBadRequest
Constructor
handleSolution(BindingSet) - Method in class org.eaglei.repository.format.SPARQLHTMLWriter
handleSolution(BindingSet) - Method in class org.eaglei.repository.format.SPARQLTextWriter
Add a solution to the stream
handleSolution(BindingSet) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition.WFTHandler
handleStatement(Statement) - Method in class org.eaglei.repository.format.RDFContextNTriplesWriter
handleStatement(Statement) - Method in class org.eaglei.repository.format.RDFHTMLWriter
Harvest - Class in org.eaglei.repository.servlet
Harvest service - retrieves listing of eagle-i resource instances in order to "harvest" metadata to build and maintain external indexes.
Harvest() - Constructor for class org.eaglei.repository.servlet.Harvest
 
Harvest.DetailArg - Enum in org.eaglei.repository.servlet
values of 'detail' arg
HAS_ADD_ACCESS - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant HAS_ADD_ACCESS
HAS_ADMIN_ACCESS - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant HAS_ADMIN_ACCESS
HAS_ANY_ACCESS - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant HAS_ANY_ACCESS
HAS_EDIT_TOKEN - Static variable in class org.eaglei.repository.vocabulary.REPO
hasEditToken property
HAS_PRINCIPAL_NAME - Static variable in class org.eaglei.repository.vocabulary.REPO
:hasPrincipalName property
HAS_READ_ACCESS - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant HAS_READ_ACCESS
HAS_REMOVE_ACCESS - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant HAS_REMOVE_ACCESS
HAS_ROLE - Static variable in class org.eaglei.repository.vocabulary.REPO
hasRole property
HAS_WORKFLOW_OWNER - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant HAS_WORKFLOW_OWNER
HAS_WORKFLOW_STATE - Static variable in class org.eaglei.repository.vocabulary.REPO
Fake Workflow properties
HasContentCache - Annotation Type in org.eaglei.repository
Marker annotation to declare a Class that caches some RDF content in static or singleton memory.
hashCode() - Method in class org.eaglei.repository.auth.AuthUserTomcat
hashCode() - Method in class org.eaglei.repository.model.EditToken
hashCode() - Method in class org.eaglei.repository.model.NamedGraph
hashCode() - Method in class org.eaglei.repository.model.QueryMacro
hashCode() - Method in class org.eaglei.repository.model.Role
hashCode() - Method in class org.eaglei.repository.model.User
hashCode() - Method in class org.eaglei.repository.model.workflow.WorkflowState
hashCode() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
hasNext() - Method in class org.eaglei.repository.rid.RIDSequence
hasNext
hasPermission(HttpServletRequest, Resource, Access) - Static method in enum org.eaglei.repository.model.Access
hasPermission - predicate, general permission test.
hasPermissionOnUser(HttpServletRequest, String) - Static method in enum org.eaglei.repository.model.Access
Special case access predicate on User objects.
hasRoleP(Role) - Method in class org.eaglei.repository.model.User
has role predicate - the P suffix is a Lisp thing
hasRoleP(URI) - Method in class org.eaglei.repository.model.User
hasRoleP
head_jsp - Class in jsp.repository
 
head_jsp() - Constructor for class jsp.repository.head_jsp
 
HTMLFilter - Class in org.eaglei.repository.util
HTML filter utility.
HttpStatusException - Exception in org.eaglei.repository.status
Superclass for exceptions that get turned into HTTP status codes in the response by a servlet wrapper class.
HttpStatusException(int, String) - Constructor for exception org.eaglei.repository.status.HttpStatusException
Constructor for HttpStatusException.
HttpStatusException(int, String, Throwable) - Constructor for exception org.eaglei.repository.status.HttpStatusException
Constructor for HttpStatusException.

I

IDENTIFIER - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant IDENTIFIER
ImmutableObjectModel - Class in org.eaglei.repository.model
Outline of all "Object Model" classes - even the writable ones are a subclass of this.
ImmutableObjectModel() - Constructor for class org.eaglei.repository.model.ImmutableObjectModel
 
IMPLICIT_ROLES - Static variable in class org.eaglei.repository.vocabulary.REPO
"implicit" role URIs that should be added to EVERY user as statements.
ImportExport - Class in org.eaglei.repository.servlet
Structured export and import of resource instances OR user instances.
ImportExport() - Constructor for class org.eaglei.repository.servlet.ImportExport
 
ImportExport.NewGraphArg - Enum in org.eaglei.repository.servlet
Enumerated values of 'graph' arg - must be public for parseKeyword.
ImportExport.TypeArg - Enum in org.eaglei.repository.servlet
Enumerated values of 'type' arg - must be public for parseKeyword.
importGrants(HttpServletRequest, RepositoryConnection, URI, URI) - Static method in class org.eaglei.repository.model.AccessGrant
Get importable access grant statements for URI from import document.
indent(String, int) - Static method in class org.eaglei.repository.util.Utils
Create a string where every line is indented by the specified number of spaces.
index_jsp - Class in jsp
 
index_jsp() - Constructor for class jsp.index_jsp
 
index_jsp - Class in jsp.repository.admin
 
index_jsp() - Constructor for class jsp.repository.admin.index_jsp
 
index_jsp - Class in jsp.repository.contact
 
index_jsp() - Constructor for class jsp.repository.contact.index_jsp
 
index_jsp - Class in jsp.repository.logout
 
index_jsp() - Constructor for class jsp.repository.logout.index_jsp
 
index_jsp - Class in jsp.repository.query
 
index_jsp() - Constructor for class jsp.repository.query.index_jsp
 
index_jsp - Class in jsp.repository.version
 
index_jsp() - Constructor for class jsp.repository.version.index_jsp
 
init(ServletConfig) - Method in class org.eaglei.repository.servlet.Disseminate
Configure this servlet instance as "authenticated" or not.
init(ServletConfig) - Method in class org.eaglei.repository.servlet.ImportExport
Configure this servlet as either import or export mode.
init() - Method in class org.eaglei.repository.servlet.Model
init(FilterConfig) - Method in class org.eaglei.repository.util.WithRepositoryConnection
INITIAL - Static variable in class org.eaglei.repository.vocabulary.REPO
some properties of workflow transition class
initialize() - Method in class org.eaglei.repository.Configuration
Explicit initialization, invoked by bootstrap sequence in Lifecycle.
initialize(ServletContext) - Static method in class org.eaglei.repository.Lifecycle
Web app initialization hook that initiates the bootstrap process: 1.
INSTANCE_CSS - Static variable in class org.eaglei.repository.Configuration
CSS stylesheet for HTML dissemination output, if any
INSTANCE_JS - Static variable in class org.eaglei.repository.Configuration
List of JavaScript URLs to be included in HTML dissemination output
INSTANCE_XSLT - Static variable in class org.eaglei.repository.Configuration
stylesheet for transforming HTML dissemination output, if any
Internal - Class in org.eaglei.repository.servlet
Report on and optionally reload the internally-maintaned graphs.
Internal() - Constructor for class org.eaglei.repository.servlet.Internal
 
Internal.Action - Enum in org.eaglei.repository.servlet
 
InternalGraphs - Static variable in class org.eaglei.repository.util.SPARQL
Constant InternalGraphs
InternalServerErrorException - Exception in org.eaglei.repository.status
Signal a fatal runtime error that should result in a 500 (ise) status returned to the HTTP client.
InternalServerErrorException(String) - Constructor for exception org.eaglei.repository.status.InternalServerErrorException
Constructor for InternalServerErrorException.
InternalServerErrorException(String, Throwable) - Constructor for exception org.eaglei.repository.status.InternalServerErrorException
Constructor for InternalServerErrorException.
InternalServerErrorException(Throwable) - Constructor for exception org.eaglei.repository.status.InternalServerErrorException
Constructor for InternalServerErrorException.
invokeTransition(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.workflow.Workflow
Invoke (follow) a workflow transition on an instance, if allowed.
IS_DELETED - Static variable in class org.eaglei.repository.vocabulary.REPO
special keyword used in /harvest results as predicate in deleted flag
IS_IMPLICIT - Static variable in class org.eaglei.repository.vocabulary.REPO
isImplicit property
isAccessPredicate(URI) - Static method in enum org.eaglei.repository.model.Access
Predicate testing whether a URI is a valid access grant property.
isAnonymousReadable() - Method in class org.eaglei.repository.model.NamedGraph
Can be read by anonymous user (i.e.
isBuiltin() - Method in class org.eaglei.repository.model.Role
predicate - is this one of the permanent builtin roles?
isDirty() - Method in class org.eaglei.repository.model.WritableObjectModel
Getter
isErrorAction() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
predicate true if action indicates an error
isImplicit() - Method in class org.eaglei.repository.model.Role
predicate - value of implicit
isLoginable() - Method in class org.eaglei.repository.model.User
does this user have credentials to be able to login.
isManaged() - Method in class org.eaglei.repository.model.NamedGraph
When true, graph has metadata and is managed by repository.
isParameterPresent(HttpServletRequest, String) - Method in class org.eaglei.repository.servlet.RepositoryServlet
return true when parameter is present, even if no value XXX needs javadoc
isProvenancePredicate(URI) - Static method in class org.eaglei.repository.model.Provenance
Predicate method, true if URI is a provenance predicate URI.
isSessionStale(HttpSession) - Method in class org.eaglei.repository.Lifecycle
Compare current webapp generation with value (if any) cached in session, also update session's generation to current.
isSuperuser(HttpServletRequest) - Static method in class org.eaglei.repository.auth.Authentication
isSuperuser
isSuperuser() - Method in interface org.eaglei.repository.auth.AuthUser
Getter for Administrator state
isSuperuser() - Method in class org.eaglei.repository.auth.AuthUserTomcat
Getter
isSuperuser() - Method in class org.eaglei.repository.model.Role
isSuperuser
isSuperuser() - Method in class org.eaglei.repository.model.User
isSuperuser
isUUID() - Method in class org.eaglei.repository.rid.RIDGenerator
Generates a new time field.
isValidURI(String) - Static method in class org.eaglei.repository.util.Utils
Test whether a string is a well-formed-enough absolute URI that it will not cause createURI to fail.
isWorkflowPredicate(URI) - Static method in class org.eaglei.repository.model.workflow.Workflow
Predicate that is true if this is a predicate managed by workflow so e.g.

J

join(String, String[]) - Static method in class org.eaglei.repository.util.Utils
Like perl join()
jsp - package jsp
 
jsp.repository - package jsp.repository
 
jsp.repository.admin - package jsp.repository.admin
 
jsp.repository.contact - package jsp.repository.contact
 
jsp.repository.logout - package jsp.repository.logout
 
jsp.repository.query - package jsp.repository.query
 
jsp.repository.version - package jsp.repository.version
 

L

Lifecycle - Class in org.eaglei.repository
This is a singleton class that encompasses the application state.
Lifecycle(ServletContext) - Constructor for class org.eaglei.repository.Lifecycle
Constructor for Lifecycle.
ListGraphs - Class in org.eaglei.repository.servlet
Returns a listing of available named graphs.
ListGraphs() - Constructor for class org.eaglei.repository.servlet.ListGraphs
 
loadEmptyGraphFromInit(RepositoryConnection, URI, boolean) - Method in class org.eaglei.repository.Lifecycle
Initialize an empty named graph from its registered "initial contents" file (a webapp resource).
LOGDIR - Static variable in class org.eaglei.repository.Configuration
optional alternate log directory
logout(HttpServletRequest) - Static method in class org.eaglei.repository.auth.Authentication
Destroy current session and credentials (if possible) most web browsers cache the HTTP Basic creds so user needs to trash those explicitly right after running this.

M

makeContentType(String, String) - Static method in class org.eaglei.repository.util.Utils
Combine MIME type expression with charset string (IFF not already present), and return the result.
makeDateTime(Date) - Static method in class org.eaglei.repository.model.Provenance
Utility translation method, returns typed literal of specified moment
makePreciseHTTPDate(Date) - Static method in class org.eaglei.repository.util.Utils
Returns a Date formatted in a more precise version of the standard HTTP date format - the same as the conventional standard format but with milliseconds added to the time.
makeURI(String) - Static method in class org.eaglei.repository.vocabulary.REPO
Utility to create a URI in the REPO namespace out of the given suffix.
MATCH_ANYTHING - Static variable in class org.eaglei.repository.vocabulary.REPO
wildcard URI for update servlet
MBOX - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant MBOX
MBOX_SHA1SUM - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant MBOX_SHA1SUM
MEDIATOR - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant MEDIATOR
memory_002dreport_jsp - Class in jsp.repository.admin
 
memory_002dreport_jsp() - Constructor for class jsp.repository.admin.memory_002dreport_jsp
 
MIME - Static variable in class org.eaglei.repository.format.RDFHTMLWriter
Constant MIME="text/html"
MinimalInferencer - Class in org.eaglei.repository.inferencer
Sesame RDF Database extension to add: Custom minimalist inferencing SAIL layer for eagle-i Data Repoository.
MinimalInferencer() - Constructor for class org.eaglei.repository.inferencer.MinimalInferencer
Constructor for MinimalInferencer.
MinimalInferencer(NotifyingSail) - Constructor for class org.eaglei.repository.inferencer.MinimalInferencer
Constructor for MinimalInferencer.
Model - Class in org.eaglei.repository.servlet
Report on and load the data model ontology from various sources.
Model() - Constructor for class org.eaglei.repository.servlet.Model
 
MODIFIED - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant MODIFIED

N

NAME - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant NAME
NAMED_GRAPH - Static variable in class org.eaglei.repository.vocabulary.REPO
NamedGraph type
NamedGraph - Class in org.eaglei.repository.model
Named Graph object model, collects metadata about the named graph stored in repo's intenal metadata graph.
namedGraphs_jsp - Class in jsp.repository.admin
 
namedGraphs_jsp() - Constructor for class jsp.repository.admin.namedGraphs_jsp
 
NamedGraphType - Enum in org.eaglei.repository.model
This class is both an enumeration and an ImmutableObjectModel representing the allowable Types of Named Graphs.
NAMESPACE - Static variable in class org.eaglei.repository.Configuration
namespace URI prefix for local resources
NAMESPACE - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Repository Ontology Namespace Preifx (and URI of Named Graph)
NAMESPACE - Static variable in class org.eaglei.repository.vocabulary.FOAF
Repository Ontology Namespace Preifx (and URI of Named Graph)
NAMESPACE - Static variable in class org.eaglei.repository.vocabulary.REPO
Repository Ontology Namespace Preifx (and URI of Named Graph)
NAMESPACE_URI - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant NAMESPACE_URI
NAMESPACE_URI - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant NAMESPACE_URI
NAMESPACE_URI - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant NAMESPACE_URI
negotiateBooleanContent(HttpServletRequest, String) - Static method in class org.eaglei.repository.util.Formats
Get negotiated MIME type for Boolean serialization format
negotiateHTMLorRDFContent(HttpServletRequest, String) - Static method in class org.eaglei.repository.util.Formats
Get negotiated MIME type for HTML *or* RDF serialization format Only for Dissemination servlet which prefers to return HTML.
negotiateRDFContent(HttpServletRequest, String) - Static method in class org.eaglei.repository.util.Formats
Get negotiated MIME type for RDF serialization format
negotiateTupleContent(HttpServletRequest, String) - Static method in class org.eaglei.repository.util.Formats
Get negotiated MIME type for Tuple serialization format
New - Class in org.eaglei.repository.servlet
New class.
New() - Constructor for class org.eaglei.repository.servlet.New
 
newID() - Method in class org.eaglei.repository.rid.RIDGenerator
newID
newIDs(int) - Method in class org.eaglei.repository.rid.RIDGenerator
newIDs
next() - Method in class org.eaglei.repository.rid.RIDSequence
next
NG_DEFAULT_WORKSPACE - Static variable in class org.eaglei.repository.vocabulary.REPO
Default Workspace graph
NG_INFERRED - Static variable in class org.eaglei.repository.vocabulary.REPO
Graph for inferred statements
NG_INTERNAL - Static variable in class org.eaglei.repository.vocabulary.REPO
Internal Metadata graph
NG_METADATA - Static variable in class org.eaglei.repository.vocabulary.REPO
Publically-Visible Metadata graph
NG_PUBLISHED - Static variable in class org.eaglei.repository.vocabulary.REPO
Published Data graph
NG_QUERY - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant NG_QUERY
NG_REPO_ONTOLOGY - Static variable in class org.eaglei.repository.vocabulary.REPO
Repo Ontology graph
NG_TYPE - Static variable in class org.eaglei.repository.vocabulary.REPO
Functional Property describing type of a named graph
NG_USERS - Static variable in class org.eaglei.repository.vocabulary.REPO
Repository Users (like published, but separate) graph
NG_WITHDRAWN - Static variable in class org.eaglei.repository.vocabulary.REPO
Withdrawn Data graph
NGTYPE_INTERNAL - Static variable in class org.eaglei.repository.vocabulary.REPO
Type of named graph
NGTYPE_METADATA - Static variable in class org.eaglei.repository.vocabulary.REPO
Type of named graph
NGTYPE_ONTOLOGY - Static variable in class org.eaglei.repository.vocabulary.REPO
Type of named graph that contains ontology data
NGTYPE_PUBLISHED - Static variable in class org.eaglei.repository.vocabulary.REPO
Type of named graph
NGTYPE_WORKSPACE - Static variable in class org.eaglei.repository.vocabulary.REPO
Type of named graph
normalizeBNodes - Static variable in class org.eaglei.repository.format.RDFContextNTriplesWriter
 
NotAcceptableException - Exception in org.eaglei.repository.status
Signal a fatal runtime error that should result in a 406 (Not Acceptable) status returned to the HTTP client.
NotAcceptableException(String) - Constructor for exception org.eaglei.repository.status.NotAcceptableException
Constructor for NotAcceptableException.
NotAcceptableException(String, Throwable) - Constructor for exception org.eaglei.repository.status.NotAcceptableException
Constructor for NotAcceptableException.
NotAcceptableException(Throwable) - Constructor for exception org.eaglei.repository.status.NotAcceptableException
Constructor for NotAcceptableException.
NotFoundException - Exception in org.eaglei.repository.status
Signal a fatal runtime error that should result in a 404 (Not Found) status returned to the HTTP client.
NotFoundException(String) - Constructor for exception org.eaglei.repository.status.NotFoundException
Constructor for NotFoundException.
NotFoundException(String, Throwable) - Constructor for exception org.eaglei.repository.status.NotFoundException
Constructor for NotFoundException.
NotFoundException(Throwable) - Constructor for exception org.eaglei.repository.status.NotFoundException
Constructor for NotFoundException.
notifyDataReplaced() - Method in class org.eaglei.repository.Lifecycle
Hook to signal to the application that all RDF data has been replaced, e.g.

O

ONLINE_ACCOUNT - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant ONLINE_ACCOUNT
onTransition(HttpServletRequest, URI, Value) - Method in class org.eaglei.repository.model.workflow.ActionMoveGraph
Action implementation: ve resource's properties to new named graph
onTransition(HttpServletRequest, URI, Value) - Method in class org.eaglei.repository.model.workflow.ErrorAction
This method gets called when an instance undergoes a workflow transition.
onTransition(HttpServletRequest, URI, Value) - Method in interface org.eaglei.repository.model.workflow.WorkflowAction
This method gets called when an instance undergoes a workflow transition.
ORDER - Static variable in class org.eaglei.repository.vocabulary.REPO
 
org.eaglei.repository - package org.eaglei.repository
 
org.eaglei.repository.auth - package org.eaglei.repository.auth
 
org.eaglei.repository.format - package org.eaglei.repository.format
 
org.eaglei.repository.inferencer - package org.eaglei.repository.inferencer
 
org.eaglei.repository.model - package org.eaglei.repository.model
 
org.eaglei.repository.model.workflow - package org.eaglei.repository.model.workflow
 
org.eaglei.repository.rid - package org.eaglei.repository.rid
 
org.eaglei.repository.servlet - package org.eaglei.repository.servlet
 
org.eaglei.repository.servlet.admin - package org.eaglei.repository.servlet.admin
 
org.eaglei.repository.status - package org.eaglei.repository.status
 
org.eaglei.repository.util - package org.eaglei.repository.util
 
org.eaglei.repository.vocabulary - package org.eaglei.repository.vocabulary
 
ORGANIZATION - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant ORGANIZATION

P

parse(String) - Static method in enum org.eaglei.repository.model.NamedGraphType
Interpret string as one of the enumerated type names
parse(URI) - Static method in enum org.eaglei.repository.model.NamedGraphType
Interpret URI as one of the enumerated type names
parseBooleanParameter(String, String, boolean, boolean) - Static method in class org.eaglei.repository.util.Utils
Special query arg parser for args with boolean values.
parseKeywordArg(Class, String, String, boolean, Enum) - Static method in class org.eaglei.repository.util.Utils
Parse a query arg value that is supposed to belong to an Enum set.
parseURI(String, String, boolean) - Static method in class org.eaglei.repository.util.Utils
Translates string to URI with sanity check.
parseView(String) - Static method in enum org.eaglei.repository.model.View
parseView - find View matching name.
parseXMLDate(String) - Static method in class org.eaglei.repository.util.Utils
Parse a date string in the XML date format, return a Calendar
PERSON - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant PERSON
PERSON - Static variable in class org.eaglei.repository.vocabulary.REPO
Person class
Postlogue - Static variable in class org.eaglei.repository.format.SPARQLHTMLWriter
HTML trailer
prettyPrint(Dataset, int) - Static method in class org.eaglei.repository.util.Utils
Formatted human-readable view of Dataset contents which works even when some members are null.
prettyPrint(Dataset) - Static method in class org.eaglei.repository.util.Utils
Prettyprint the dataset with no ident.
printValue(Appendable, Value) - Static method in class org.eaglei.repository.format.SPARQLHTMLWriter
Render Value as an HTML fragment including markup for the switchable "detail" view that hides literal type URIs for less clutter.
PROJECT - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant PROJECT
Prologue - Static variable in class org.eaglei.repository.format.SPARQLHTMLWriter
HTML header
Provenance - Class in org.eaglei.repository.model
Utility class to manage provenance metadata, whcih is a constellation of statements about a resource instance or Named Graph URI.
Provenance(URI) - Constructor for class org.eaglei.repository.model.Provenance
Constructor
PROVENANCE_GRAPH - Static variable in class org.eaglei.repository.model.Provenance
Graph where ALL provenance metadata is stored.

Q

QUERY - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant QUERY
QUERY_MACRO - Static variable in class org.eaglei.repository.vocabulary.REPO
query macro type and properties
QueryMacro - Class in org.eaglei.repository.model
Object Model for query macros, used in the SPARQL Workbench.

R

RDFContextNTriplesWriter - Class in org.eaglei.repository.format
Writer for "Context NTriples" RDF serialization format About the Format: This is NOT a standard or "offcial" format.
RDFContextNTriplesWriter(Writer) - Constructor for class org.eaglei.repository.format.RDFContextNTriplesWriter
Constructor for RDFContextNTriplesWriter.
RDFContextNTriplesWriterFactory - Class in org.eaglei.repository.format
Boilerplate for Sesame RDF writer registry.
RDFContextNTriplesWriterFactory() - Constructor for class org.eaglei.repository.format.RDFContextNTriplesWriterFactory
 
RDFHTMLWriter - Class in org.eaglei.repository.format
RDF HTML writer About the Format: Writes a simple HTML table.
RDFHTMLWriter(Writer) - Constructor for class org.eaglei.repository.format.RDFHTMLWriter
Constructor for RDFHTMLWriter.
RDFHTMLWriterFactory - Class in org.eaglei.repository.format
Boilerplate for Sesame RDF writer registry.
RDFHTMLWriterFactory() - Constructor for class org.eaglei.repository.format.RDFHTMLWriterFactory
 
reallyEndRDF() - Method in class org.eaglei.repository.util.AppendingRDFHandler
recreate(HttpServletRequest, URI, String, String) - Method in class org.eaglei.repository.model.User
Create a new user graph to replace the existing user, for import.
redirectToJSP(HttpServletRequest, HttpServletResponse, String, String[], String...) - Method in class org.eaglei.repository.servlet.RepositoryServlet
Detect and manage the redirect to a JSP page whose form action invoked this servlet.
reinstate(String) - Method in class org.eaglei.repository.model.User
Restore ability to login with credentials
releaseClaim(HttpServletRequest) - Method in class org.eaglei.repository.model.workflow.Workflow
Release an existing claim, if allowed.
remove() - Method in class org.eaglei.repository.rid.RIDSequence
remove
removeGrant(HttpServletRequest, URI, URI, URI) - Static method in class org.eaglei.repository.model.AccessGrant
Remove specified grant of access from an instance.
removeGrantAsAdministrator(HttpServletRequest, URI, URI, URI) - Static method in class org.eaglei.repository.model.AccessGrant
Remove specified grant of access from a URI, but WITHOUT cehcking for ADMIN access.
removeRole(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.User
removeRole
removeRole(HttpServletRequest, Role) - Method in class org.eaglei.repository.model.User
removeRole
renderLinkedURI(URI) - Static method in class org.eaglei.repository.format.SPARQLHTMLWriter
Produce HTML rendering of a URI that is possibly linked data.
REPO - Class in org.eaglei.repository.vocabulary
Constants from the Repository RDF namespace; URIs of useful classes and properties.
RepositoryContextListener - Class in org.eaglei.repository.servlet
Manage application-wide state by responding to Web Application lifecycle events.
RepositoryContextListener() - Constructor for class org.eaglei.repository.servlet.RepositoryContextListener
 
RepositoryServlet - Class in org.eaglei.repository.servlet
Superclass for repo servlet classes, with shared utility methods.
RepositoryServlet() - Constructor for class org.eaglei.repository.servlet.RepositoryServlet
 
RIDGenerator - Class in org.eaglei.repository.rid
 
RIDGenerator(TimeProvider) - Constructor for class org.eaglei.repository.rid.RIDGenerator
Constructor for RIDGenerator.
RIDSequence - Class in org.eaglei.repository.rid
 
RIDSequence(long, long, int, int) - Constructor for class org.eaglei.repository.rid.RIDSequence
Constructor for RIDSequence.
Role - Class in org.eaglei.repository.model
Role object model, reflects the :Role object in RDF database.
ROLE - Static variable in class org.eaglei.repository.vocabulary.REPO
Role Class
ROLE_ANONYMOUS - Static variable in class org.eaglei.repository.vocabulary.REPO
the Anonymous meta-role
ROLE_AUTHENTICATED - Static variable in class org.eaglei.repository.vocabulary.REPO
the Authenticated meta-role
ROLE_QUERY - Static variable in class org.eaglei.repository.model.Role
SPARQL query to get role descriptions, works on both internal repo graph and exports.
ROLE_SUPERUSER - Static variable in class org.eaglei.repository.vocabulary.REPO
the Superuser role
roles_jsp - Class in jsp.repository.admin
 
roles_jsp() - Constructor for class jsp.repository.admin.roles_jsp
 

S

sendTupleQueryResults(HttpServletRequest, HttpServletResponse, String, Iterable<BindingSet>) - Static method in class org.eaglei.repository.util.SPARQL
Sends HTTP result document for a list of artificially-generated tuple-query results.
service(HttpServletRequest, HttpServletResponse) - Method in class org.eaglei.repository.servlet.RepositoryServlet
Wrap service() with error-handling, logging, and cleanup of any Sesame repository connection left open.
SESAMEDIR - Static variable in class org.eaglei.repository.Configuration
required subdirectory for sesame nativestore files
SESAMEINDEXES - Static variable in class org.eaglei.repository.Configuration
optional sesame nativestore index configuration
setAction(HttpServletRequest, String) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Setter for action class
setActionParameter(HttpServletRequest, String) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Setter for ActionParameter
setActionParameter(HttpServletRequest, Value) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Setter for action parameter
setAuthType(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.User
Ignores request but arg is there for uniformity.
setComment(HttpServletRequest, String) - Method in class org.eaglei.repository.model.Role
Setter for the field comment.
setComment(HttpServletRequest, String) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Setter for comment field - null clears the comment.
setCreated(HttpServletRequest, Date) - Method in class org.eaglei.repository.model.Provenance
Convenience method to set Created provenance values, upon creation.
setDirty(boolean) - Method in class org.eaglei.repository.model.WritableObjectModel
Change the "dirty" flag to reflect when local change was made.
setFinal(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
setter for final state
setFirstName(HttpServletRequest, String) - Method in class org.eaglei.repository.model.User
Change value of first name.
setInitial(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Setter for initial staet
setIsSuperuser(boolean) - Method in interface org.eaglei.repository.auth.AuthUser
Setter for isSuperuser flag
setIsSuperuser(boolean) - Method in class org.eaglei.repository.auth.AuthUserTomcat
Setter for superuser role
setIsSuperuser(boolean) - Method in class org.eaglei.repository.model.User
setIsSuperuser
setLabel(HttpServletRequest, String) - Method in class org.eaglei.repository.model.NamedGraph
Setter for the field label.
setLabel(HttpServletRequest, String) - Method in class org.eaglei.repository.model.Role
Setter for the field label.
setLabel(HttpServletRequest, String) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Setter for the field label.
setLastName(HttpServletRequest, String) - Method in class org.eaglei.repository.model.User
Setter for the field lastName.
setMbox(HttpServletRequest, String) - Method in class org.eaglei.repository.model.User
Setter for the field mbox.
setMediated(HttpServletRequest, Date) - Method in class org.eaglei.repository.model.Provenance
Convenience method to set provenance values for "mediated" creation, i.e.
setModified(HttpServletRequest, Date) - Method in class org.eaglei.repository.model.Provenance
Convenience method to set provenance values upon last modification.
setOrder(HttpServletRequest, String) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
setter for order
setPassword(String) - Method in interface org.eaglei.repository.auth.AuthUser
Setter for password
setPassword(String) - Method in class org.eaglei.repository.auth.AuthUserTomcat
Setter for password
setPassword(HttpServletRequest, String) - Method in class org.eaglei.repository.model.User
Ignores request but arg is there for uniformity.
setProperty(HttpServletRequest, URI, String) - Method in class org.eaglei.repository.model.User
Set a random property on the user (for RDF import).
setProvenanceStatement(RepositoryConnection, URI, Value) - Method in class org.eaglei.repository.model.Provenance
Set provenance values directly, bypass e.g.
setRoles(HttpServletRequest, Role[]) - Method in class org.eaglei.repository.model.User
setRoles
setSource(HttpServletRequest, String, Date) - Method in class org.eaglei.repository.model.Provenance
Add/replace the Source provenance fields: dcterms:source -> bnode dcterms:identifier -> filename or URI it came from dcterms:modified -> last-mod date of source
setSourceStatements(RepositoryConnection, Value, Value) - Method in class org.eaglei.repository.model.Provenance
Convenience method to set source provenance identifier and last-mod time of resource ingested into a graph.
setType(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.NamedGraph
Setter for the field type.
setType(HttpServletRequest, NamedGraphType) - Method in class org.eaglei.repository.model.NamedGraph
Setter for the field type.
setWorkspace(HttpServletRequest, URI) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Setter for workspace field - null clears it
SIMPLE_TRANSITION_QUERY - Static variable in class org.eaglei.repository.model.workflow.WorkflowTransition
SPARQL Query to get all transitions and labels..
SOURCE - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant SOURCE
SOURCE_IDENTIFIER - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant SOURCE_IDENTIFIER - a made-up URI for an identifier within a source node.
SOURCE_MODIFIED - Static variable in class org.eaglei.repository.vocabulary.DCTERMS
Constant SOURCE_MODIFIED - a made-up URI for a modified date within a source node.
SPARQL - Class in org.eaglei.repository.util
Constants and utilities helpful in building SPARQL queries.
SPARQLHTMLWriter - Class in org.eaglei.repository.format
Very quick-n-dirty HTML query result output, helpful for interactive debugging XXX FIXME low priority, maybe later, add class tags, odd/even rows and columns, to facilitate better styling.
SPARQLHTMLWriter(OutputStream) - Constructor for class org.eaglei.repository.format.SPARQLHTMLWriter
Constructor for SPARQLHTMLWriter.
SPARQLHTMLWriterFactory - Class in org.eaglei.repository.format
Boilerplate for Sesame query result writer registry.
SPARQLHTMLWriterFactory() - Constructor for class org.eaglei.repository.format.SPARQLHTMLWriterFactory
 
SparqlProtocol - Class in org.eaglei.repository.servlet
SPARQL query protocol service see http://www.w3.org/TR/rdf-sparql-protocol/ Nonstandard extensions: format arg - controls the result format view - select default and named graphs from view instead of *-uri args.
SparqlProtocol() - Constructor for class org.eaglei.repository.servlet.SparqlProtocol
 
SPARQLTextWriter - Class in org.eaglei.repository.format
Tuple query results writer for plain text format.
SPARQLTextWriter(OutputStream) - Constructor for class org.eaglei.repository.format.SPARQLTextWriter
Default constructor for SPARQLTextWriter.
SPARQLTextWriterFactory - Class in org.eaglei.repository.format
Boilerplate for Sesame query result writer registry.
SPARQLTextWriterFactory() - Constructor for class org.eaglei.repository.format.SPARQLTextWriterFactory
 
startQueryResult(List<String>) - Method in class org.eaglei.repository.format.SPARQLHTMLWriter
startQueryResult(List<String>) - Method in class org.eaglei.repository.format.SPARQLTextWriter
Start streaming result for given bindings
startRDF() - Method in class org.eaglei.repository.format.RDFHTMLWriter
startRDF
startRDF() - Method in class org.eaglei.repository.util.AppendingRDFHandler
STARTUP - Static variable in class org.eaglei.repository.Lifecycle
Mark the startup time for display in admin page, etc.
SUPERUSER_ROLE_NAME - Static variable in class org.eaglei.repository.auth.Authentication
Superuser role name in Java servlet container, i.e.
SURNAME - Static variable in class org.eaglei.repository.vocabulary.FOAF
Constant SURNAME
SystemTimeProvider - Class in org.eaglei.repository.rid
SystemTimeProvider class.
SystemTimeProvider() - Constructor for class org.eaglei.repository.rid.SystemTimeProvider
 

T

TBoxInferencer - Class in org.eaglei.repository.inferencer
Ontology (TBox) inference to support Custom minimalist inferencing SAIL layer.
theFormat - Static variable in class org.eaglei.repository.format.SPARQLHTMLWriter
Constant theFormat
timeNow() - Method in class org.eaglei.repository.rid.SystemTimeProvider
timeNow
timeNow() - Method in interface org.eaglei.repository.rid.TimeProvider
timeNow
TimeProvider - Interface in org.eaglei.repository.rid
TimeProvider interface.
TITLE - Static variable in class org.eaglei.repository.Configuration
title of repository for UI labels
toString() - Method in enum org.eaglei.repository.model.Access
 
toString() - Method in enum org.eaglei.repository.model.DataModel
Render as string.
toString() - Method in class org.eaglei.repository.model.EditToken
toString
toString() - Method in class org.eaglei.repository.model.QueryMacro
toString
toString() - Method in class org.eaglei.repository.model.Role
toString
toString() - Method in class org.eaglei.repository.model.User
toString
toString() - Method in class org.eaglei.repository.model.workflow.WorkflowState
toString() - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
toString
toString(byte[]) - Static method in class org.eaglei.repository.util.Utils
Like Arrays.toString() but prints bytes in hex instead of signed decimal for easier debugging of char strings.
transitions_jsp - Class in jsp.repository.admin
 
transitions_jsp() - Constructor for class jsp.repository.admin.transitions_jsp
 
TransportAccessGrant - Class in org.eaglei.repository.model
Export and import of access grants about other object(s).
TransportAccessGrant() - Constructor for class org.eaglei.repository.model.TransportAccessGrant
 
Transporter - Interface in org.eaglei.repository.model
All object models that can be subjects of the /export and /import services must implement this interface.
TransportRole - Class in org.eaglei.repository.model
Export and import of the Role object.
TransportRole() - Constructor for class org.eaglei.repository.model.TransportRole
 
TransportUser - Class in org.eaglei.repository.model
Export and import of the User object (and authentication credentials).
TransportUser() - Constructor for class org.eaglei.repository.model.TransportUser
 
TransportWorkflowTransition - Class in org.eaglei.repository.model.workflow
Export and import of the WorkflowTransition object.
TransportWorkflowTransition() - Constructor for class org.eaglei.repository.model.workflow.TransportWorkflowTransition
 
tupleQueryRequest(HttpServletRequest, HttpServletResponse, String, String, Dataset) - Static method in class org.eaglei.repository.util.SPARQL
Generic code to implement a Servlet body whose main purpose is to execute a tabular (Select) SPARQL query and return the results.

U

update(HttpServletRequest) - Method in class org.eaglei.repository.model.NamedGraph
This gets called to force out changes, but not "commit" them.
update(HttpServletRequest) - Method in class org.eaglei.repository.model.WritableObjectModel
Copy local changes to the RDF database.
Update - Class in org.eaglei.repository.servlet
Create or update a "single" resource instance.
Update() - Constructor for class org.eaglei.repository.servlet.Update
 
Update.Action - Enum in org.eaglei.repository.servlet
 
UpdateGrants - Class in org.eaglei.repository.servlet.admin
Add and remove Access Grants.
UpdateGrants() - Constructor for class org.eaglei.repository.servlet.admin.UpdateGrants
 
UpdateGrants.Action - Enum in org.eaglei.repository.servlet.admin
 
updateLastModified(HttpServletRequest, Date) - Method in class org.eaglei.repository.Lifecycle
Update the PER-REQUEST CACHED date that MIGHT eventually be used to update the repo's global "last modified" timestamp.
UpdateNamedGraph - Class in org.eaglei.repository.servlet.admin
Modify the metadata for a Named Graph.
UpdateNamedGraph() - Constructor for class org.eaglei.repository.servlet.admin.UpdateNamedGraph
 
UpdateRole - Class in org.eaglei.repository.servlet.admin
Create and/or modify a Role.
UpdateRole() - Constructor for class org.eaglei.repository.servlet.admin.UpdateRole
 
UpdateRole.Action - Enum in org.eaglei.repository.servlet.admin
 
UpdateTransition - Class in org.eaglei.repository.servlet.admin
Method: POST only.
UpdateTransition() - Constructor for class org.eaglei.repository.servlet.admin.UpdateTransition
 
UpdateTransition.Action - Enum in org.eaglei.repository.servlet.admin
 
UpdateUser - Class in org.eaglei.repository.servlet.admin
User Account creation and update.
UpdateUser() - Constructor for class org.eaglei.repository.servlet.admin.UpdateUser
 
UpdateUser.Action - Enum in org.eaglei.repository.servlet.admin
 
UpperCaseStr - Class in org.eaglei.repository.util
Custom SPARQL query function, repo:upperCaseStr.
UpperCaseStr() - Constructor for class org.eaglei.repository.util.UpperCaseStr
 
urlEncode(String) - Static method in class org.eaglei.repository.util.Utils
Returns an URL-encoded UTF8 encoding of the string.
User - Class in org.eaglei.repository.model
User object model, reflects the user's properties in the both RDBMS and RDF database.
USER_DATASET - Static variable in class org.eaglei.repository.model.User
dataset that includes relevant graphs - internal and user
USER_GRAPH - Static variable in class org.eaglei.repository.model.User
Named graph where we create User objects.
users_jsp - Class in jsp.repository.admin
 
users_jsp() - Constructor for class jsp.repository.admin.users_jsp
 
Utils - Class in org.eaglei.repository.util
Utility methods

V

valueAsString(Value) - Static method in class org.eaglei.repository.util.Utils
Return the "most readable" string representation of a Sesame RDF Value object - Value can be URI, BNode, or Literal; in the case of a Literal it just returns hte string content, no datatype or language annotations.
valueOf(String) - Static method in enum org.eaglei.repository.model.Access
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.model.DataModel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.model.NamedGraphType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.model.View
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.admin.UpdateGrants.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.admin.UpdateRole.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.admin.UpdateTransition.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.admin.UpdateUser.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.Graph.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.Harvest.DetailArg
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.ImportExport.NewGraphArg
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.ImportExport.TypeArg
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.Internal.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.Update.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.WorkflowResources.DetailArg
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.servlet.WorkflowResources.OwnerArg
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.repository.util.DuplicateArg
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.eaglei.repository.model.Access
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.model.DataModel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.model.NamedGraphType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.model.View
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.admin.UpdateGrants.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.admin.UpdateRole.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.admin.UpdateTransition.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.admin.UpdateUser.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.Graph.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.Harvest.DetailArg
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.ImportExport.NewGraphArg
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.ImportExport.TypeArg
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.Internal.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.Update.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.WorkflowResources.DetailArg
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.servlet.WorkflowResources.OwnerArg
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.repository.util.DuplicateArg
Returns an array containing the constants of this enum type, in the order they are declared.
VERSION_INFO - Static variable in class org.eaglei.repository.vocabulary.REPO
like owl:versionInfo
View - Enum in org.eaglei.repository.model
Views are named datasets to be used in SPARQL queries, which are constructed dynamically according to the current user's access permissions.

W

WFS_CURATION - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant WFS_CURATION
WFS_DRAFT - Static variable in class org.eaglei.repository.vocabulary.REPO
 
WFS_NEW - Static variable in class org.eaglei.repository.vocabulary.REPO
workflow state instances
WFS_PUBLISHED - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant WFS_PUBLISHED
WFS_WITHDRAWN - Static variable in class org.eaglei.repository.vocabulary.REPO
Constant WFS_WITHDRAWN
WhoAmI - Class in org.eaglei.repository.servlet
Get status of current authenticated user as tabular result.
WhoAmI() - Constructor for class org.eaglei.repository.servlet.WhoAmI
 
WithRepositoryConnection - Class in org.eaglei.repository.util
Give wrapped servlet a Sesame repository connection with automatic cleanup.
WithRepositoryConnection() - Constructor for class org.eaglei.repository.util.WithRepositoryConnection
 
Workflow - Class in org.eaglei.repository.model.workflow
Collect and manage the workflow properties on an instance.
WORKFLOW_STATE - Static variable in class org.eaglei.repository.vocabulary.REPO
class
WORKFLOW_TRANSITION - Static variable in class org.eaglei.repository.vocabulary.REPO
workflow transition class
WorkflowAction - Interface in org.eaglei.repository.model.workflow
Interface for workflow action callbacks.
WorkflowClaim - Class in org.eaglei.repository.servlet
Args: uri - URI of the resource instance to claim user - URI of the user
WorkflowClaim() - Constructor for class org.eaglei.repository.servlet.WorkflowClaim
 
WorkflowPush - Class in org.eaglei.repository.servlet
Servlet to invoke ("push") a workflow transition, on a specific instance.
WorkflowPush() - Constructor for class org.eaglei.repository.servlet.WorkflowPush
 
WorkflowRelease - Class in org.eaglei.repository.servlet
Args: uri - URI of the resource instance to release
WorkflowRelease() - Constructor for class org.eaglei.repository.servlet.WorkflowRelease
 
WorkflowResources - Class in org.eaglei.repository.servlet
Returns a tabular listing of information about Resource Instances and their workflow status.
WorkflowResources() - Constructor for class org.eaglei.repository.servlet.WorkflowResources
 
WorkflowResources.DetailArg - Enum in org.eaglei.repository.servlet
 
WorkflowResources.OwnerArg - Enum in org.eaglei.repository.servlet
 
WorkflowState - Class in org.eaglei.repository.model.workflow
Workflow WorkflowState object model, reflects the :WorkflowState object in RDF database.
WorkflowTransition - Class in org.eaglei.repository.model.workflow
WorkflowTransition object model, reflects the :WorkflowTransition object in RDF database.
WorkflowTransition.WFTHandler - Class in org.eaglei.repository.model.workflow
Tuple query result handler to gather list of all transitions (or one); removes duplicates since data errors can produce them.
WorkflowTransitions - Class in org.eaglei.repository.servlet
Returns a tabular listing of available workflow transitions.
WorkflowTransitions() - Constructor for class org.eaglei.repository.servlet.WorkflowTransitions
 
WORKSPACE - Static variable in class org.eaglei.repository.vocabulary.REPO
 
WritableObjectModel - Class in org.eaglei.repository.model
Outline of all *writable* "Object Model" classes, in which instances can be added and changed.
WritableObjectModel() - Constructor for class org.eaglei.repository.model.WritableObjectModel
 
write(HttpServletRequest, boolean) - Method in class org.eaglei.repository.model.workflow.WorkflowTransition
Write the properties of a WorkflowTransition into RDF database.

_

_jspDestroy() - Method in class jsp.index_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.banner_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.editGrants_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.editGraph_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.editRole_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.editTransition_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.editUserPortlet_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.error_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.index_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.memory_002dreport_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.namedGraphs_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.roles_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.transitions_jsp
 
_jspDestroy() - Method in class jsp.repository.admin.users_jsp
 
_jspDestroy() - Method in class jsp.repository.contact.index_jsp
 
_jspDestroy() - Method in class jsp.repository.head_jsp
 
_jspDestroy() - Method in class jsp.repository.logout.index_jsp
 
_jspDestroy() - Method in class jsp.repository.query.index_jsp
 
_jspDestroy() - Method in class jsp.repository.version.index_jsp
 
_jspInit() - Method in class jsp.index_jsp
 
_jspInit() - Method in class jsp.repository.admin.banner_jsp
 
_jspInit() - Method in class jsp.repository.admin.editGrants_jsp
 
_jspInit() - Method in class jsp.repository.admin.editGraph_jsp
 
_jspInit() - Method in class jsp.repository.admin.editRole_jsp
 
_jspInit() - Method in class jsp.repository.admin.editTransition_jsp
 
_jspInit() - Method in class jsp.repository.admin.editUserPortlet_jsp
 
_jspInit() - Method in class jsp.repository.admin.error_jsp
 
_jspInit() - Method in class jsp.repository.admin.index_jsp
 
_jspInit() - Method in class jsp.repository.admin.memory_002dreport_jsp
 
_jspInit() - Method in class jsp.repository.admin.namedGraphs_jsp
 
_jspInit() - Method in class jsp.repository.admin.roles_jsp
 
_jspInit() - Method in class jsp.repository.admin.transitions_jsp
 
_jspInit() - Method in class jsp.repository.admin.users_jsp
 
_jspInit() - Method in class jsp.repository.contact.index_jsp
 
_jspInit() - Method in class jsp.repository.head_jsp
 
_jspInit() - Method in class jsp.repository.logout.index_jsp
 
_jspInit() - Method in class jsp.repository.query.index_jsp
 
_jspInit() - Method in class jsp.repository.version.index_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.index_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.banner_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.editGrants_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.editGraph_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.editRole_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.editTransition_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.editUserPortlet_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.error_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.index_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.memory_002dreport_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.namedGraphs_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.roles_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.transitions_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.admin.users_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.contact.index_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.head_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.logout.index_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.query.index_jsp
 
_jspService(HttpServletRequest, HttpServletResponse) - Method in class jsp.repository.version.index_jsp
 

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