org.eaglei.search.provider.nif
Class NIFSearchProvider

java.lang.Object
  org.eaglei.search.provider.nif.NIFSearchProvider

All Implemented Interfaces:

org.eaglei.search.provider.SearchProvider

public class NIFSearchProvider
extends java.lang.Object
implements org.eaglei.search.provider.SearchProvider

Abstract implementation of the eagle-i SearchProvider interface that wraps an NCBIDBProvider.

Author:

rfrost

Field Summary

protected static boolean	DEBUG
protected org.eaglei.model.EIOntModel	eagleiOntModel
protected org.eaglei.services.InstitutionRegistry	institutionRegistry
protected static org.apache.commons.logging.Log	logger

Constructor Summary

NIFSearchProvider(org.eaglei.model.EIOntModel eagleiOntModel, org.eaglei.services.InstitutionRegistry registry)
Creates a new NCBIDBProvider that executes queries against NCBI.

Method Summary

org.eaglei.search.provider.SearchCounts	count(org.eaglei.search.provider.SearchCountRequest countRequest)
protected java.lang.String	getQuery(org.eaglei.search.provider.SearchRequest request, boolean includeType, java.util.Set<org.eaglei.model.EIURI> typesToIgnore, boolean includeInstitution) Generic query generation logic
org.eaglei.search.provider.ClassCountResult	getResourceCount(org.eaglei.search.provider.SearchRequest request)
protected static org.eaglei.model.EIURI	getType(org.eaglei.search.provider.SearchRequest request) Gets the type from a SearchRequest.
void	init()
protected boolean	isType(org.eaglei.model.EIURI type, org.eaglei.model.EIURI target) Checks, with inference, if a given type is of another type.
org.eaglei.search.provider.SearchResultSet	query(org.eaglei.search.provider.SearchRequest request)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final org.apache.commons.logging.Log logger

DEBUG

protected static final boolean DEBUG

eagleiOntModel

protected final org.eaglei.model.EIOntModel eagleiOntModel

institutionRegistry

protected final org.eaglei.services.InstitutionRegistry institutionRegistry

Constructor Detail

NIFSearchProvider

public NIFSearchProvider(org.eaglei.model.EIOntModel eagleiOntModel,
                         org.eaglei.services.InstitutionRegistry registry)

Creates a new NCBIDBProvider that executes queries against NCBI.

Method Detail

init

public void init()
          throws java.io.IOException

Specified by:

init in interface org.eaglei.search.provider.SearchProvider

Throws:

java.io.IOException

query

public org.eaglei.search.provider.SearchResultSet query(org.eaglei.search.provider.SearchRequest request)
                                                 throws java.io.IOException

Specified by:

query in interface org.eaglei.search.provider.SearchProvider

Throws:

java.io.IOException

count

public org.eaglei.search.provider.SearchCounts count(org.eaglei.search.provider.SearchCountRequest countRequest)
                                              throws java.io.IOException

Specified by:

count in interface org.eaglei.search.provider.SearchProvider

Throws:

java.io.IOException

getType

protected static org.eaglei.model.EIURI getType(org.eaglei.search.provider.SearchRequest request)

Gets the type from a SearchRequest.

Parameters:

request - Request

Returns:

Type uri

isType

protected boolean isType(org.eaglei.model.EIURI type,
                         org.eaglei.model.EIURI target)

Checks, with inference, if a given type is of another type.

getQuery

protected java.lang.String getQuery(org.eaglei.search.provider.SearchRequest request,
                                    boolean includeType,
                                    java.util.Set<org.eaglei.model.EIURI> typesToIgnore,
                                    boolean includeInstitution)

Generic query generation logic

getResourceCount

public org.eaglei.search.provider.ClassCountResult getResourceCount(org.eaglei.search.provider.SearchRequest request)

Specified by:

getResourceCount in interface org.eaglei.search.provider.SearchProvider