org.eaglei.datatools.jena
Class RESTRepositoryProvider

java.lang.Object
  org.eaglei.services.repository.AbstractRepositoryProvider
      org.eaglei.datatools.jena.RESTRepositoryProvider

All Implemented Interfaces:

CrudProvider, DatatoolsMetadataProvider, InstanceProvider, QueryProvider, RepositoryProvider, WorkFlowProvider

public final class RESTRepositoryProvider
extends org.eaglei.services.repository.AbstractRepositoryProvider
implements RepositoryProvider

Author:

Ricardo De Lima, Lucy Hadden, Daniela Bourges-Waldegg April 11, 2010 Center for Biomedical Informatics (CBMI)

Nested Class Summary

Nested classes/interfaces inherited from class org.eaglei.services.repository.AbstractRepositoryProvider

org.eaglei.services.repository.AbstractRepositoryProvider.RestCommands

Field Summary

Fields inherited from class org.eaglei.services.repository.AbstractRepositoryProvider

DEFAULT_REPOSITORY_URI, DEFAULT_REPOSITORY_URL, FORMAT_VALUE, isDebugEnabled, LABEL_QUERY_FAILED, log, WORKFLOW_TRANSITION_ALLOWED, WORKFLOW_TRANSITION_FROM, WORKFLOW_TRANSITION_FROM_LABEL, WORKFLOW_TRANSITION_LABEL, WORKFLOW_TRANSITION_SUBJECT, WORKFLOW_TRANSITION_TO, WORKFLOW_TRANSITION_TO_LABEL

Fields inherited from interface org.eaglei.datatools.provider.CrudProvider

DEFAULT_WORKSPACE_ENTITY

Constructor Summary

RESTRepositoryProvider(org.eaglei.model.EIOntModel ontModel, org.eaglei.services.repository.SecurityProvider commonSecurityProvider)

Method Summary

boolean	addLabToUser(org.eaglei.security.Session session, org.eaglei.model.EIURI labUri) Deprecated.
java.util.List<org.eaglei.model.EIURI>	claim(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIURI> uris)
void	createInstance(org.eaglei.security.Session session, org.eaglei.model.EIInstance instance, org.eaglei.model.EIEntity workspaceEntity)
void	createInstance(org.eaglei.security.Session session, java.lang.String rdfString, java.lang.String instanceUri, org.eaglei.model.EIEntity workspaceEntity)
void	createInstances(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIInstance> instances, org.eaglei.model.EIEntity workspaceEntity)
org.eaglei.model.EIInstance	deepCopy(org.eaglei.security.Session session, org.eaglei.model.EIURI originalUri)
void	deleteInstance(org.eaglei.security.Session session, org.eaglei.model.EIURI instanceUri)
void	deleteInstances(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIURI> instanceUris)
org.eaglei.model.EIInstance	duplicateInstance(org.eaglei.security.Session session, org.eaglei.model.EIInstance original)
java.util.List<org.eaglei.model.EIInstanceMinimal>	EIQuery(org.eaglei.security.Session session, java.lang.String sparql)
protected java.util.Set<org.eaglei.model.EIEntity>	getAllStubEntities(org.eaglei.security.Session session, org.eaglei.model.EIInstance instance)
FooRepositorySecurityProvider	getDatatoolsSecurityProvider()
org.eaglei.model.EIInstance	getEmptyEIInstance(org.eaglei.security.Session session, org.eaglei.model.EIURI classUri)
org.eaglei.model.EIInstance	getEmptyEIInstance(org.eaglei.security.Session session, org.eaglei.model.EIURI classUri, org.eaglei.model.EIEntity instanceEntity)
java.util.Map<org.eaglei.model.EIURI,java.lang.String>	getModifiedDates(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIURI> uris)
java.util.List<org.eaglei.model.EIURI>	getNewInstanceID(org.eaglei.security.Session session, int count)
org.eaglei.model.EIInstance	getOneInstance(org.eaglei.security.Session session, org.eaglei.model.EIURI instanceUri, boolean isExtended)
java.lang.String	getToken(org.eaglei.security.Session session, org.eaglei.model.EIInstance instance)
java.util.Map<org.eaglei.model.EIInstance,java.lang.String>	getTokens(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIInstance> instances)
java.util.List<org.eaglei.model.EIInstanceMinimal>	listReferencingResources(org.eaglei.security.Session session, org.eaglei.model.EIURI resourceUri, org.eaglei.search.provider.AuthSearchRequest queryRequest, SortByProperties orderBy, boolean strictOwnerFilter)
java.util.List<org.eaglei.model.EIInstanceMinimal>	listResources(org.eaglei.security.Session session, org.eaglei.search.provider.AuthSearchRequest queryRequest, SortByProperties orderBy, boolean isAscending, boolean strictOwnerFilter)
java.util.List<org.eaglei.model.EIInstanceMinimal>	listResources(org.eaglei.security.Session session, org.eaglei.search.provider.AuthSearchRequest queryRequest, SortByProperties orderBy, boolean isAscending, boolean strictOwnerFilter, boolean stubsOnly) Returns the list of WorkFlowTransion objects
java.util.List<org.eaglei.model.EIInstanceMinimal>	listResourcesForObjectPropertyValue(org.eaglei.security.Session session, org.eaglei.model.EIURI classUri, org.eaglei.model.EIURI provider, org.eaglei.model.EIURI state, boolean onlyProvider)
java.lang.String	query(org.eaglei.security.Session session, java.lang.String sparql)
java.util.List<org.eaglei.model.EIURI>	release(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIURI> uris)
java.lang.String	retrieveLabel(org.eaglei.security.Session session, org.eaglei.model.EIURI uri)
protected void	setReadParameters(org.apache.commons.httpclient.methods.PostMethod method)
org.eaglei.model.EIInstance	setReferencingResources(org.eaglei.security.Session session, org.eaglei.model.EIInstance instance)
protected void	setWriteParameters(org.apache.commons.httpclient.methods.PostMethod method, java.lang.String id)
java.util.List<org.eaglei.model.EIURI>	transition(org.eaglei.security.Session session, java.util.List<org.eaglei.model.EIURI> uris, org.eaglei.model.EIEntity transitionEntity)
void	updateInstance(org.eaglei.security.Session session, org.eaglei.model.EIInstance instance, java.lang.String token)
java.lang.String	updateInstance(org.eaglei.security.Session session, java.lang.String rdfString, java.lang.String instanceUri, java.lang.String token)
void	updateInstances(org.eaglei.security.Session session, java.util.Map<org.eaglei.model.EIInstance,java.lang.String> instancesWithTokens)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RESTRepositoryProvider

public RESTRepositoryProvider(org.eaglei.model.EIOntModel ontModel,
                              org.eaglei.services.repository.SecurityProvider commonSecurityProvider)

Method Detail

getDatatoolsSecurityProvider

public FooRepositorySecurityProvider getDatatoolsSecurityProvider()

getNewInstanceID

public java.util.List<org.eaglei.model.EIURI> getNewInstanceID(org.eaglei.security.Session session,
                                                               int count)
                                                        throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

getNewInstanceID in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

getEmptyEIInstance

public org.eaglei.model.EIInstance getEmptyEIInstance(org.eaglei.security.Session session,
                                                      org.eaglei.model.EIURI classUri,
                                                      org.eaglei.model.EIEntity instanceEntity)
                                               throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

getEmptyEIInstance in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

getEmptyEIInstance

public org.eaglei.model.EIInstance getEmptyEIInstance(org.eaglei.security.Session session,
                                                      org.eaglei.model.EIURI classUri)
                                               throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

getEmptyEIInstance in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

getToken

public java.lang.String getToken(org.eaglei.security.Session session,
                                 org.eaglei.model.EIInstance instance)
                          throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

getToken in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

getTokens

public java.util.Map<org.eaglei.model.EIInstance,java.lang.String> getTokens(org.eaglei.security.Session session,
                                                                             java.util.List<org.eaglei.model.EIInstance> instances)
                                                                      throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

getTokens in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

updateInstance

public void updateInstance(org.eaglei.security.Session session,
                           org.eaglei.model.EIInstance instance,
                           java.lang.String token)
                    throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

updateInstance in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

updateInstance

public java.lang.String updateInstance(org.eaglei.security.Session session,
                                       java.lang.String rdfString,
                                       java.lang.String instanceUri,
                                       java.lang.String token)
                                throws org.eaglei.services.repository.RepositoryProviderException

Throws:

org.eaglei.services.repository.RepositoryProviderException

updateInstances

public void updateInstances(org.eaglei.security.Session session,
                            java.util.Map<org.eaglei.model.EIInstance,java.lang.String> instancesWithTokens)
                     throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

updateInstances in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

createInstances

public void createInstances(org.eaglei.security.Session session,
                            java.util.List<org.eaglei.model.EIInstance> instances,
                            org.eaglei.model.EIEntity workspaceEntity)
                     throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

createInstances in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

createInstance

public void createInstance(org.eaglei.security.Session session,
                           org.eaglei.model.EIInstance instance,
                           org.eaglei.model.EIEntity workspaceEntity)
                    throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

createInstance in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

createInstance

public void createInstance(org.eaglei.security.Session session,
                           java.lang.String rdfString,
                           java.lang.String instanceUri,
                           org.eaglei.model.EIEntity workspaceEntity)
                    throws org.eaglei.services.repository.RepositoryProviderException

Throws:

org.eaglei.services.repository.RepositoryProviderException

deepCopy

public org.eaglei.model.EIInstance deepCopy(org.eaglei.security.Session session,
                                            org.eaglei.model.EIURI originalUri)
                                     throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

deepCopy in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

deleteInstances

public void deleteInstances(org.eaglei.security.Session session,
                            java.util.List<org.eaglei.model.EIURI> instanceUris)
                     throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

deleteInstances in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

deleteInstance

public void deleteInstance(org.eaglei.security.Session session,
                           org.eaglei.model.EIURI instanceUri)
                    throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

deleteInstance in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

getModifiedDates

public java.util.Map<org.eaglei.model.EIURI,java.lang.String> getModifiedDates(org.eaglei.security.Session session,
                                                                               java.util.List<org.eaglei.model.EIURI> uris)
                                                                        throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

getModifiedDates in interface CrudProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

addLabToUser

@Deprecated
public boolean addLabToUser(org.eaglei.security.Session session,
                                       org.eaglei.model.EIURI labUri)
                     throws org.eaglei.services.repository.RepositoryProviderException

Deprecated.

Specified by:

addLabToUser in interface DatatoolsMetadataProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

EIQuery

public java.util.List<org.eaglei.model.EIInstanceMinimal> EIQuery(org.eaglei.security.Session session,
                                                                  java.lang.String sparql)
                                                           throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

EIQuery in interface QueryProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

listResourcesForObjectPropertyValue

public java.util.List<org.eaglei.model.EIInstanceMinimal> listResourcesForObjectPropertyValue(org.eaglei.security.Session session,
                                                                                              org.eaglei.model.EIURI classUri,
                                                                                              org.eaglei.model.EIURI provider,
                                                                                              org.eaglei.model.EIURI state,
                                                                                              boolean onlyProvider)
                                                                                       throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

listResourcesForObjectPropertyValue in interface QueryProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

query

public java.lang.String query(org.eaglei.security.Session session,
                              java.lang.String sparql)
                       throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

query in interface QueryProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

retrieveLabel

public java.lang.String retrieveLabel(org.eaglei.security.Session session,
                                      org.eaglei.model.EIURI uri)
                               throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

retrieveLabel in interface QueryProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

setReferencingResources

public org.eaglei.model.EIInstance setReferencingResources(org.eaglei.security.Session session,
                                                           org.eaglei.model.EIInstance instance)
                                                    throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

setReferencingResources in interface InstanceProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

getOneInstance

public org.eaglei.model.EIInstance getOneInstance(org.eaglei.security.Session session,
                                                  org.eaglei.model.EIURI instanceUri,
                                                  boolean isExtended)
                                           throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

getOneInstance in interface InstanceProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

listResources

public java.util.List<org.eaglei.model.EIInstanceMinimal> listResources(org.eaglei.security.Session session,
                                                                        org.eaglei.search.provider.AuthSearchRequest queryRequest,
                                                                        SortByProperties orderBy,
                                                                        boolean isAscending,
                                                                        boolean strictOwnerFilter)
                                                                 throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

listResources in interface WorkFlowProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

listResources

public java.util.List<org.eaglei.model.EIInstanceMinimal> listResources(org.eaglei.security.Session session,
                                                                        org.eaglei.search.provider.AuthSearchRequest queryRequest,
                                                                        SortByProperties orderBy,
                                                                        boolean isAscending,
                                                                        boolean strictOwnerFilter,
                                                                        boolean stubsOnly)
                                                                 throws org.eaglei.services.repository.RepositoryProviderException

Description copied from interface: WorkFlowProvider

Returns the list of WorkFlowTransion objects

Specified by:

listResources in interface WorkFlowProvider

Returns:

List

Throws:

org.eaglei.services.repository.RepositoryProviderException - TODO

See Also:

It Uses the Repository API call /repository/workflow/transitions,please see Workflow design notes at Workflow Design Notes

listReferencingResources

public java.util.List<org.eaglei.model.EIInstanceMinimal> listReferencingResources(org.eaglei.security.Session session,
                                                                                   org.eaglei.model.EIURI resourceUri,
                                                                                   org.eaglei.search.provider.AuthSearchRequest queryRequest,
                                                                                   SortByProperties orderBy,
                                                                                   boolean strictOwnerFilter)
                                                                            throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

listReferencingResources in interface WorkFlowProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

claim

public java.util.List<org.eaglei.model.EIURI> claim(org.eaglei.security.Session session,
                                                    java.util.List<org.eaglei.model.EIURI> uris)
                                             throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

claim in interface WorkFlowProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

release

public java.util.List<org.eaglei.model.EIURI> release(org.eaglei.security.Session session,
                                                      java.util.List<org.eaglei.model.EIURI> uris)
                                               throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

release in interface WorkFlowProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

transition

public java.util.List<org.eaglei.model.EIURI> transition(org.eaglei.security.Session session,
                                                         java.util.List<org.eaglei.model.EIURI> uris,
                                                         org.eaglei.model.EIEntity transitionEntity)
                                                  throws org.eaglei.services.repository.RepositoryProviderException

Specified by:

transition in interface WorkFlowProvider

Throws:

org.eaglei.services.repository.RepositoryProviderException

setWriteParameters

protected void setWriteParameters(org.apache.commons.httpclient.methods.PostMethod method,
                                  java.lang.String id)

setReadParameters

protected void setReadParameters(org.apache.commons.httpclient.methods.PostMethod method)

duplicateInstance

public org.eaglei.model.EIInstance duplicateInstance(org.eaglei.security.Session session,
                                                     org.eaglei.model.EIInstance original)
                                              throws org.eaglei.services.repository.RepositoryProviderException

Throws:

org.eaglei.services.repository.RepositoryProviderException

getAllStubEntities

protected java.util.Set<org.eaglei.model.EIEntity> getAllStubEntities(org.eaglei.security.Session session,
                                                                      org.eaglei.model.EIInstance instance)
                                                               throws org.eaglei.services.repository.RepositoryProviderException

Throws:

org.eaglei.services.repository.RepositoryProviderException