A B C D E F G H I L M N O P Q R S T U V W X

A

ADDITIONAL_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
ADDITIONAL_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
addMapping(Mapping) - Method in class org.eaglei.datatools.interim.cores.Mapping
 
addMapping(String, String, String) - Method in class org.eaglei.datatools.interim.cores.Mapping
 
addMapping(String, String, String, String) - Method in class org.eaglei.datatools.interim.cores.Mapping
 
appendErrorFileToLogger(String) - Static method in class org.eaglei.datatools.etl.server.LoggerFactory
 
appendOutputFileToLogger(String) - Static method in class org.eaglei.datatools.etl.server.LoggerFactory
 

B

BadInputException - Exception in org.eaglei.datatools.etl.server.exceptions
 
BadInputException(String) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.BadInputException
 
BadInputException(String, Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.BadInputException
 
BadInputException(Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.BadInputException
 
BasicUtils - Class in org.eaglei.datatools.etl.utils
Title: BasicUtils
BasicUtils() - Constructor for class org.eaglei.datatools.etl.utils.BasicUtils
 
BROOntologyReasoner - Class in org.eaglei.datatools.etl.server
 
BROOntologyReasoner() - Constructor for class org.eaglei.datatools.etl.server.BROOntologyReasoner
 
BulkOperation - Class in org.eaglei.datatools.etl.utils
 
BulkOperation(String, JenaEIInstanceFactory, SecurityProvider) - Constructor for class org.eaglei.datatools.etl.utils.BulkOperation
 
BulkWorkFlow - Class in org.eaglei.datatools.etl.utils
 
BulkWorkFlow(String, JenaEIInstanceFactory, SecurityProvider) - Constructor for class org.eaglei.datatools.etl.utils.BulkWorkFlow
Constructor where we get the ReposiotryProvider object and also gets session by loging into reposiotry

C

capturedWith - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
centerFrame(Window, Window) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Centers a frame with respect to another window, or the whole screen
CmapToRDF - Class in org.eaglei.datatools.etl.utils
 
CmapToRDF() - Constructor for class org.eaglei.datatools.etl.utils.CmapToRDF
 
collectElements(Iterator) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Returns the list of elements returned by an iterator in a Set
containsAny(Set, Set) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Checks to see if any elements of one set are present in another.
convertStreamToString(InputStream) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
 
convertStringToUnicodeString(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Converts a regular java string to its unicode string representation

Cores3BatchRDFGenerator - Class in org.eaglei.datatools.interim.cores
 
Cores3BatchRDFGenerator() - Constructor for class org.eaglei.datatools.interim.cores.Cores3BatchRDFGenerator
 
Cores3ExcelParser - Class in org.eaglei.datatools.interim.cores
 
Cores3ExcelParser(String) - Constructor for class org.eaglei.datatools.interim.cores.Cores3ExcelParser
 
Cores3ExcelParser.ProcessedTab - Class in org.eaglei.datatools.interim.cores
 
Cores3ExcelParser.ProcessedTab(Mapping, List<Map<String, String>>) - Constructor for class org.eaglei.datatools.interim.cores.Cores3ExcelParser.ProcessedTab
 
Cores3Mappings - Class in org.eaglei.datatools.interim.cores
 
Cores3Mappings() - Constructor for class org.eaglei.datatools.interim.cores.Cores3Mappings
 
Cores3Model - Class in org.eaglei.datatools.interim.cores
 
Cores3Model(OntModel) - Constructor for class org.eaglei.datatools.interim.cores.Cores3Model
 
Cores3RDFGenerator - Class in org.eaglei.datatools.interim.cores
 
Cores3RDFGenerator() - Constructor for class org.eaglei.datatools.interim.cores.Cores3RDFGenerator
 
createResourceInstance(Mapping, Map<String, String>) - Method in class org.eaglei.datatools.interim.cores.Cores3Model
 
curatorsComments - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 

D

Data - Class in org.eaglei.datatools.etl.server.extractor.parsers
 
Data() - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.Data
 
Data(int, int) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.Data
 
Data(Object[][], Object[]) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.Data
 
Data(Object[], int) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.Data
 
Data(Vector, int) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.Data
 
Data(Vector, Vector) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.Data
 
DeETL - Class in org.eaglei.datatools.etl.utils
This class is for deleting instances which ETled from particular file, -f takes filename as input ,this is the file name which we want to delete all instances ETLed from .-r takes repository configuration file path FLOW : deleteInsntaceETledFromFIle(String) takes file name as input ,it then calls getResourcesOfFile(String) where it builds query to ge the Instance URI's we want to delete,It builds the query by calling SPARQLQueryUtil.getInstance().getResourcesETLedFromFileQuery(fileName); .We query repository using the query which we built it then returns results in xml format ,xml is parsed for Instance URIs in ETLSPARQLQueryUtil.getInstanceURI(resources) method ,which returns array if instance URI's .
DeETL(String, JenaEIInstanceFactory, SecurityProvider) - Constructor for class org.eaglei.datatools.etl.utils.DeETL
Constructor where we get the ReposiotryProvider object and also gets session by loging into reposiotry
DEFAULT_CREATE_TRANSITION - Static variable in class org.eaglei.datatools.etl.server.RepoService
 
deleteInstanceETLedFromFile(String) - Method in class org.eaglei.datatools.etl.utils.DeETL
Delete the instances which are ETLed from fileName
doETL(String) - Method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
doLoading(Statement[]) - Method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
doTransform(Extractor, FileStatistics, String) - Method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 

E

EAGLE_I_SITES - Static variable in class org.eaglei.datatools.interim.cores.UniversityConstants
 
EIFileParser<I> - Class in org.eaglei.datatools.etl.server.extractor.parsers
Eagle-i Parser for ETL ,the implemented class of the EIFileParser should typically have the Constructor with 'file' argument.
EIFileParser() - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.EIFileParser
 
EMBEDDED_CLASS_EXPRESSION_MATCHER - Static variable in class org.eaglei.datatools.etl.server.transformer.EmbeddedExpression
 
EmbeddedExpression - Class in org.eaglei.datatools.etl.server.transformer
 
EmbeddedExpression(String, Map<String, String>, Statement, Model, AnnotationFormModel, RepoService) - Constructor for class org.eaglei.datatools.etl.server.transformer.EmbeddedExpression
 
encode(URL) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Encodes the specified URL, changes spaces to %20
equals(Object) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelAbstractions.ExcelTab
 
errorFileLogger - Static variable in class org.eaglei.datatools.etl.server.LoggerFactory
 
ETLEntryPoint - Class in org.eaglei.datatools.etl.server
The the ETL command line tool Mandatory Inputs -d Directory path -r Repository Config file location -m mapDirecotry location Option Inputs -p Promote parameter -l logfile path -e errorlogs file path -o output logs file path
ETLException - Exception in org.eaglei.datatools.etl.server.exceptions
 
ETLException(String) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ETLException
 
ETLException(String, Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ETLException
 
ETLException(Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ETLException
 
ETLInputs - Class in org.eaglei.datatools.etl.server
 
ETLInputs(String, String, String, Loader.Promote, String, String, String) - Constructor for class org.eaglei.datatools.etl.server.ETLInputs
 
ETLRepositoryConfiguration - Class in org.eaglei.datatools.etl.server
 
ETLRepositoryConfiguration() - Constructor for class org.eaglei.datatools.etl.server.ETLRepositoryConfiguration
 
ETLSPARQLQueryUtil - Class in org.eaglei.datatools.etl.utils
 
ETLSPARQLQueryUtil() - Constructor for class org.eaglei.datatools.etl.utils.ETLSPARQLQueryUtil
 
ETLUtils - Class in org.eaglei.datatools.etl.utils
 
ETLUtils() - Constructor for class org.eaglei.datatools.etl.utils.ETLUtils
 
evaluateExpression(Map<String, String>, String) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
Evaluates the object Expression ,that is it converts $1 $2 ..
ExcelAbstractions - Class in org.eaglei.datatools.etl.server.extractor.parsers.excelparsers
 
ExcelAbstractions.ExcelTab - Class in org.eaglei.datatools.etl.server.extractor.parsers.excelparsers
 
ExcelAbstractions.ExcelTab(String, Data) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelAbstractions.ExcelTab
 
ExcelExtractor - Class in org.eaglei.datatools.etl.server.extractor
 
ExcelExtractor(File) - Constructor for class org.eaglei.datatools.etl.server.extractor.ExcelExtractor
 
ExcelFileParser - Class in org.eaglei.datatools.etl.server.extractor.parsers.excelparsers
 
ExcelFileParser(File) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
ExcelFileParser.ExcelFileMetaData - Class in org.eaglei.datatools.etl.server.extractor.parsers.excelparsers
 
ExcelFileParser.ExcelFileMetaData() - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser.ExcelFileMetaData
 
ExcelFileParser.SheetMetaData - Class in org.eaglei.datatools.etl.server.extractor.parsers.excelparsers
 
ExcelFileParser.SheetMetaData() - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser.SheetMetaData
 
ExcelParserException - Exception in org.eaglei.datatools.excel
 
ExcelParserException() - Constructor for exception org.eaglei.datatools.excel.ExcelParserException
 
ExcelParserException(String) - Constructor for exception org.eaglei.datatools.excel.ExcelParserException
 
ExcelParserException(Throwable) - Constructor for exception org.eaglei.datatools.excel.ExcelParserException
 
ExcelParserException(String, Throwable) - Constructor for exception org.eaglei.datatools.excel.ExcelParserException
 
ExcelTemplateConfiguration - Class in org.eaglei.datatools.etl.server.extractor.parsers.excelparsers
 
ExcelTemplateConfiguration() - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelTemplateConfiguration
 
ExcelUtils - Class in org.eaglei.datatools.excel
 
ExcelUtils() - Constructor for class org.eaglei.datatools.excel.ExcelUtils
 
ExceptionWhileMakingRepoSerivce - Exception in org.eaglei.datatools.etl.server.exceptions
 
ExceptionWhileMakingRepoSerivce(String) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ExceptionWhileMakingRepoSerivce
 
ExceptionWhileMakingRepoSerivce(String, Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ExceptionWhileMakingRepoSerivce
 
ExceptionWhileMakingRepoSerivce(Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ExceptionWhileMakingRepoSerivce
 
Extractor - Class in org.eaglei.datatools.etl.server.extractor
 
Extractor() - Constructor for class org.eaglei.datatools.etl.server.extractor.Extractor
 
ExtractorException - Exception in org.eaglei.datatools.etl.server.exceptions
 
ExtractorException(String) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ExtractorException
 
ExtractorException(String, Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ExtractorException
 
ExtractorException(Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.ExtractorException
 
ExtractorFactory - Class in org.eaglei.datatools.etl.server.extractor
 
ExtractorFactory() - Constructor for class org.eaglei.datatools.etl.server.extractor.ExtractorFactory
 
ExtractorFactory.ExtractorType - Enum in org.eaglei.datatools.etl.server.extractor
 
extraData - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 

F

FileIterator - Class in org.eaglei.datatools.etl.server.extractor
 
FileIterator(String) - Constructor for class org.eaglei.datatools.etl.server.extractor.FileIterator
 
FileMetaData - Interface in org.eaglei.datatools.etl.server.extractor.parsers.excelparsers
 
FileStatistics - Class in org.eaglei.datatools.etl.server
 
FileStatistics(String) - Constructor for class org.eaglei.datatools.etl.server.FileStatistics
 
FIRST_ROWS - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
formXML(String) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
forRegex(String) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 

G

generateToFile(String, String, String, OntModel) - Static method in class org.eaglei.datatools.interim.cores.Cores3RDFGenerator
 
generateToModel(String, OntModel) - Static method in class org.eaglei.datatools.interim.cores.Cores3RDFGenerator
 
GeneratorException - Exception in org.eaglei.datatools.interim.cores
 
GeneratorException() - Constructor for exception org.eaglei.datatools.interim.cores.GeneratorException
 
GeneratorException(String) - Constructor for exception org.eaglei.datatools.interim.cores.GeneratorException
 
GeneratorException(Throwable) - Constructor for exception org.eaglei.datatools.interim.cores.GeneratorException
 
GeneratorException(String, Throwable) - Constructor for exception org.eaglei.datatools.interim.cores.GeneratorException
 
getAllFiles(File) - Static method in class org.eaglei.datatools.interim.cores.OldFileUtils
Deprecated. return a List of all files in input directory (recursively looking into subdirectories)
getAllNamespacesFromXmlDocument() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.xmlparser.XmlFileParser
 
getAnntModel() - Method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
getClassMapping() - Method in class org.eaglei.datatools.interim.cores.Cores3ExcelParser.ProcessedTab
 
getColumnNameByColumnNumber(Integer) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser.SheetMetaData
 
getColumnNumberByColumnName(String) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser.SheetMetaData
 
getColumnNumberToColumnNameMap() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser.SheetMetaData
 
getContextNode(String) - Static method in class org.eaglei.datatools.etl.server.extractor.parsers.xmlparser.XmlFileConfiguration
 
getCredentialsForRepo(String) - Static method in class org.eaglei.datatools.etl.server.ETLRepositoryConfiguration
Reads the username and password for the repository config file
getCurrentlyProcessingFile() - Method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
getData(File) - Method in class org.eaglei.datatools.etl.server.extractor.ExcelExtractor
 
getData(File) - Method in class org.eaglei.datatools.etl.server.extractor.Extractor
We need to parse the file and convert the data into #org.eaglei.datatools.etl.server.extractor.parsers.data .
getData(File) - Method in class org.eaglei.datatools.etl.server.extractor.XmlExtractor
 
getDatatoolsConfiguration() - Method in class org.eaglei.datatools.etl.server.RepoService
 
getdcCreatorFromRepoFile(String) - Static method in class org.eaglei.datatools.etl.server.ETLRepositoryConfiguration
get the dccreators from repository config file
getEagleIResource(String) - Method in class org.eaglei.datatools.etl.server.BROOntologyReasoner
 
getEIResourcesByAllPropertiesQuery(RepositoryProvider, Model, Session) - Static method in class org.eaglei.datatools.etl.utils.ETLSPARQLQueryUtil
 
getEIResourcesByOnlyTypeANDRdfsLabel(Model) - Static method in class org.eaglei.datatools.etl.utils.ETLSPARQLQueryUtil
Returns the a sparql query that asks the repo for the URI of a resource of Model ,It builds query of properties containing only rdfs:type and rdfs:lable as predicate
getEIResourcesQueryButnotWithPassProperty(Model, Property) - Static method in class org.eaglei.datatools.etl.utils.ETLSPARQLQueryUtil
Returns the a sparql query that asks the repo for the URI of a resource of Model
getErrorFileDirecotry() - Method in class org.eaglei.datatools.etl.server.ETLInputs
 
getEtlInputs() - Static method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
getExcelFilesDirectoryPath() - Method in class org.eaglei.datatools.etl.server.ETLInputs
 
getExpressionsInMapFile(InputStream) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
getExpressionStatement() - Method in class org.eaglei.datatools.etl.server.transformer.EmbeddedExpression
 
getExpressionStatement() - Method in class org.eaglei.datatools.etl.server.transformer.MapInterpreter
 
getExpressionStatement() - Method in class org.eaglei.datatools.etl.server.transformer.OntologyExpression
 
getExpressionStatement() - Method in class org.eaglei.datatools.etl.server.transformer.ResourceExpression
 
getExpressionString() - Method in class org.eaglei.datatools.etl.server.transformer.EmbeddedExpression
 
getExpressionString() - Method in class org.eaglei.datatools.etl.server.transformer.MapInterpreter
 
getExpressionString() - Method in class org.eaglei.datatools.etl.server.transformer.OntologyExpression
 
getExpressionString() - Method in class org.eaglei.datatools.etl.server.transformer.ResourceExpression
 
getExtension() - Method in enum org.eaglei.datatools.etl.server.extractor.ExtractorFactory.ExtractorType
 
getExtracter(File) - Method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
getExtractor(File) - Static method in class org.eaglei.datatools.etl.server.extractor.ExtractorFactory
 
getFailureCount() - Method in class org.eaglei.datatools.etl.server.FileStatistics
 
getFileAsString(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Given a path to a file on the local disk, return the contents of that file as a String.

getFileMetaData() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
getFileName() - Method in class org.eaglei.datatools.etl.server.FileStatistics
 
getFormatingInfoOfFile(String) - Static method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelTemplateConfiguration
 
getFormatingInfoOfRow(String, String) - Static method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelTemplateConfiguration
Reads the content of rowInfo.prperties file
getFormVersion() - Method in class org.eaglei.datatools.etl.server.extractor.ExcelExtractor
 
getFormVersion() - Method in class org.eaglei.datatools.etl.server.extractor.Extractor
Every File which is submitted to ETL have to be associated with the form version.
getFormVersion(Sheet) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
getFormVersion() - Method in class org.eaglei.datatools.etl.server.extractor.XmlExtractor
 
getInstance() - Static method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
getInstance() - Static method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelAbstractions
 
getInstance(String, JenaEIInstanceFactory, SecurityProvider) - Static method in class org.eaglei.datatools.etl.server.RepoService
 
getInstance(JenaEIInstanceFactory, SecurityProvider) - Static method in class org.eaglei.datatools.etl.server.RepoService
 
getInstance() - Static method in class org.eaglei.datatools.etl.server.transformer.MapInterpreterTracker
 
getInstanceFactory() - Method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
getInstanceURI(String) - Static method in class org.eaglei.datatools.etl.utils.ETLSPARQLQueryUtil
get instance URI from the returned xml
getLabelAndRootURI(Model, Map<String, String>) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
getLabSheet() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
getLogFile() - Method in class org.eaglei.datatools.etl.server.ETLInputs
 
getMainSubject() - Method in class org.eaglei.datatools.etl.server.transformer.MapInterpreter
 
getMapDirectory(String, File) - Method in class org.eaglei.datatools.etl.server.extractor.Extractor
Map directories are named with following format RESOURCETYPE_VERSION.In this directory all map files are stored .
getMapFiles(File) - Method in class org.eaglei.datatools.etl.server.extractor.Extractor
gets all the map files require to transform the extracted file,returns the java.Util.Map with 'key' as map filename and 'value' as Map File
getMapInfo(String) - Static method in class org.eaglei.datatools.etl.server.extractor.parsers.MapFileConfiguration
 
getMapofColumnNameAndNumber() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser.SheetMetaData
 
getMapOfExpressionStringToResourceURI() - Method in class org.eaglei.datatools.etl.server.transformer.MapInterpreterTracker
 
getMappings() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getMapsParentDirectoryPath() - Method in class org.eaglei.datatools.etl.server.ETLInputs
 
getMetaData() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
getModel() - Method in class org.eaglei.datatools.interim.cores.Cores3Model
 
getNewInstancesFromRepo(int) - Method in class org.eaglei.datatools.etl.server.RepoService
gets the new instance from Repo
getNewResourceFromRepository(Model) - Method in class org.eaglei.datatools.etl.server.RepoService
 
getNumberOfRowsReadFromTabs() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
getOrderofMapFiles(String) - Static method in class org.eaglei.datatools.etl.server.extractor.parsers.MapFileConfiguration
 
getOutputDirectoryFile() - Method in class org.eaglei.datatools.etl.server.ETLInputs
 
getProcessedTabs() - Method in class org.eaglei.datatools.interim.cores.Cores3ExcelParser
 
getPromote(String) - Static method in enum org.eaglei.datatools.etl.server.loader.Loader.Promote
 
getPromoteParameter() - Method in class org.eaglei.datatools.etl.server.ETLInputs
 
getRandomString() - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Returns a randomly generated string of up to 15 characters.

getRandomString(int) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Returns a randomly generated string of up to X characters.

getRdftorepo() - Method in class org.eaglei.datatools.etl.utils.BulkOperation
 
getReourceURIFromModel(Model) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
getRepoConfigFile() - Method in class org.eaglei.datatools.etl.server.RepoService
 
getRepoConfigFileLocation() - Method in class org.eaglei.datatools.etl.server.ETLInputs
 
getRepoService() - Method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
getRepositoryProvider() - Method in class org.eaglei.datatools.etl.server.RepoService
 
getRepositorySecurityProvider() - Method in class org.eaglei.datatools.etl.server.RepoService
 
getResourcesOfFile(String) - Method in class org.eaglei.datatools.etl.utils.BulkOperation
gets the resources Array by making query and queriying it against repository
getSession() - Method in class org.eaglei.datatools.etl.server.RepoService
 
getSheetMetaData(String) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser.ExcelFileMetaData
 
getSheetName() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser.SheetMetaData
 
getSheets() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
getSourceID() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getSourceType() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getStringFromBufferedReader(BufferedReader) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Read the contents of the specified reader return them as a String
getsubModelByExpression(String, Model) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
this utility method returns the subModel given by the Expression such as EX:e+$1 etc FIXME:write more documentation
getSucessCount() - Method in class org.eaglei.datatools.etl.server.FileStatistics
 
getTabData() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelAbstractions.ExcelTab
 
getTabData() - Method in class org.eaglei.datatools.interim.cores.Cores3ExcelParser.ProcessedTab
 
getTabName() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelAbstractions.ExcelTab
 
getTargetID() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getTargetNS() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getTargetRangeURI() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getTargetRangeURI(String) - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getTargetUri() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getTargetUri(String) - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getTranslucentVersionOf(Image) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Changes an images alpha values to the specified value.
getType() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
getTypeOfModel(Model) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
getURLAsString(URL) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Returns the specified URL as a string.

H

hashCode() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelAbstractions.ExcelTab
 
hasNext() - Method in class org.eaglei.datatools.etl.server.extractor.FileIterator
 
hasNext() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.RowIterator
 
hexEntityStringConvert(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Converts any hex entity type chars ("é") to their ascii equivalent

I

INSTRUMENT_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
INSTRUMENT_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
interpret() - Method in class org.eaglei.datatools.etl.server.transformer.EmbeddedExpression
 
interpret() - Method in class org.eaglei.datatools.etl.server.transformer.MapInterpreter
 
interpret() - Method in class org.eaglei.datatools.etl.server.transformer.OntologyExpression
 
interpret() - Method in class org.eaglei.datatools.etl.server.transformer.ResourceExpression
 
intializeLoggers(String, String) - Static method in class org.eaglei.datatools.etl.server.LoggerFactory
 
isBlankRow(Row) - Static method in class org.eaglei.datatools.excel.ExcelUtils
 
isEmbeddedClass(EIClass, EIOntModel) - Method in class org.eaglei.datatools.etl.server.loader.Validation
 
isFileURL(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Returns string if the parameter represents a valid file URL
isInArray(int, int[]) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Returns true or false depending on whether or not the specified string is in the array.
isInstanceLableAndTypeAlreadyExsistsInRepository(EIInstance) - Method in class org.eaglei.datatools.etl.server.loader.Validation
 
isLab(EIInstance) - Method in class org.eaglei.datatools.etl.server.loader.Validation
 
isLabelPresentInMap(Model) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
isLabelPresentInMap(Statement[]) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
isSubClass(String, String) - Method in class org.eaglei.datatools.etl.server.BROOntologyReasoner
 
isSubjectExpressionPresentInModel(String, Model) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
isValidURL(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Returns whether or not the parameter is a valid URL

L

LAB_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
LAB_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
load(Statement[], String, Loader.Promote) - Method in class org.eaglei.datatools.etl.server.loader.Loader
loads statements into repository
load(Statement[], String, Loader.Promote) - Method in class org.eaglei.datatools.etl.server.loader.LoaderImpl
 
Loader - Class in org.eaglei.datatools.etl.server.loader
 
Loader() - Constructor for class org.eaglei.datatools.etl.server.loader.Loader
 
Loader.Promote - Enum in org.eaglei.datatools.etl.server.loader
 
LoaderException - Exception in org.eaglei.datatools.etl.server.exceptions
 
LoaderException(String) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.LoaderException
 
LoaderException(String, Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.LoaderException
 
LoaderException(Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.LoaderException
 
LoaderImpl - Class in org.eaglei.datatools.etl.server.loader
 
LoaderImpl(RepoService, JenaEIInstanceFactory, AnnotationFormModel) - Constructor for class org.eaglei.datatools.etl.server.loader.LoaderImpl
 
LoggerFactory - Class in org.eaglei.datatools.etl.server
 
login(String) - Method in class org.eaglei.datatools.etl.server.RepoService
 

M

main(String[]) - Static method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
main(String[]) - Static method in class org.eaglei.datatools.etl.utils.BulkWorkFlow
 
main(String[]) - Static method in class org.eaglei.datatools.etl.utils.CmapToRDF
 
main(String[]) - Static method in class org.eaglei.datatools.etl.utils.DeETL
 
main(String[]) - Static method in class org.eaglei.datatools.interim.cores.Cores3BatchRDFGenerator
 
main(String[]) - Static method in class org.eaglei.datatools.interim.cores.Cores3RDFGenerator
 
MapFileConfiguration - Class in org.eaglei.datatools.etl.server.extractor.parsers
 
MapFileConfiguration() - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.MapFileConfiguration
 
MapInterpreter - Class in org.eaglei.datatools.etl.server.transformer
 
MapInterpreter(Model, Map<String, String>, AnnotationFormModel, RepoService) - Constructor for class org.eaglei.datatools.etl.server.transformer.MapInterpreter
 
MapInterpreter(Model, Model, Map<String, String>, String, Statement, AnnotationFormModel, RepoService) - Constructor for class org.eaglei.datatools.etl.server.transformer.MapInterpreter
 
MapInterpreterTracker - Class in org.eaglei.datatools.etl.server.transformer
 
Mapping - Class in org.eaglei.datatools.interim.cores
 
Mapping(Mapping.MappingType, Mapping.SourceType, String, String, String) - Constructor for class org.eaglei.datatools.interim.cores.Mapping
 
Mapping(String, String, String) - Constructor for class org.eaglei.datatools.interim.cores.Mapping
 
Mapping(String, String, String, String) - Constructor for class org.eaglei.datatools.interim.cores.Mapping
 
Mapping.MappingType - Enum in org.eaglei.datatools.interim.cores
 
Mapping.SourceType - Enum in org.eaglei.datatools.interim.cores
 
MAPPINGS - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 

N

next() - Method in class org.eaglei.datatools.etl.server.extractor.FileIterator
 
nextRow() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.RowIterator
 
NotADirectoryException - Exception in org.eaglei.datatools.etl.server.exceptions
 
NotADirectoryException(String) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.NotADirectoryException
 
NotADirectoryException(String, Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.NotADirectoryException
 
NotADirectoryException(Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.NotADirectoryException
 

O

OldFileUtils - Class in org.eaglei.datatools.interim.cores
Deprecated. -- to replace with apache iocommons utilities
OldFileUtils() - Constructor for class org.eaglei.datatools.interim.cores.OldFileUtils
Deprecated.  
ONTOLOGY_EXPRESSION_MATCHER - Static variable in class org.eaglei.datatools.etl.server.transformer.OntologyExpression
 
OntologyExpression - Class in org.eaglei.datatools.etl.server.transformer
 
OntologyExpression(String, Statement, Model, AnnotationFormModel, Map<String, String>, RepoService) - Constructor for class org.eaglei.datatools.etl.server.transformer.OntologyExpression
 
openWorkBook(String) - Static method in class org.eaglei.datatools.excel.ExcelUtils
 
org.eaglei.datatools.etl.server - package org.eaglei.datatools.etl.server
 
org.eaglei.datatools.etl.server.exceptions - package org.eaglei.datatools.etl.server.exceptions
 
org.eaglei.datatools.etl.server.extractor - package org.eaglei.datatools.etl.server.extractor
 
org.eaglei.datatools.etl.server.extractor.parsers - package org.eaglei.datatools.etl.server.extractor.parsers
 
org.eaglei.datatools.etl.server.extractor.parsers.excelparsers - package org.eaglei.datatools.etl.server.extractor.parsers.excelparsers
 
org.eaglei.datatools.etl.server.extractor.parsers.xmlparser - package org.eaglei.datatools.etl.server.extractor.parsers.xmlparser
 
org.eaglei.datatools.etl.server.loader - package org.eaglei.datatools.etl.server.loader
 
org.eaglei.datatools.etl.server.transformer - package org.eaglei.datatools.etl.server.transformer
 
org.eaglei.datatools.etl.utils - package org.eaglei.datatools.etl.utils
 
org.eaglei.datatools.excel - package org.eaglei.datatools.excel
 
org.eaglei.datatools.interim.cores - package org.eaglei.datatools.interim.cores
 
outputFileLogger - Static variable in class org.eaglei.datatools.etl.server.LoggerFactory
 

P

parse(File) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.EIFileParser
parses the file passed in the constructor using the template Configuration file .
parse(File) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
parse(File) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.xmlparser.XmlFileParser
 
PRIMARY_INSTANCE_EXPRESSION_MATCHER - Static variable in class org.eaglei.datatools.etl.server.transformer.MapInterpreter
 
processTab(Sheet, int) - Static method in class org.eaglei.datatools.excel.ExcelUtils
Extract a information in a Tab into a List of Map of
promote(Loader.Promote) - Method in class org.eaglei.datatools.etl.utils.BulkWorkFlow
 
PROTOCOL_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
PROTOCOL_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
PUBLISH_TRANSITION - Static variable in class org.eaglei.datatools.etl.server.RepoService
 
pushToRepo(Model, Session, String, String) - Method in class org.eaglei.datatools.etl.server.RepoService
pushed the Model to Repo and promotes it
pushToRepo(EIInstance) - Method in class org.eaglei.datatools.etl.server.RepoService
 
pushToRepo(String, String) - Method in class org.eaglei.datatools.etl.server.RepoService
 

Q

query(String) - Method in class org.eaglei.datatools.etl.server.RepoService
 

R

rdftorepo - Static variable in class org.eaglei.datatools.etl.utils.BulkWorkFlow
 
readConfigPropertiesForTab(Sheet, String) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
readConfigPropertiesOfFile(String) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
readMapDirectoryPathFromFile() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
readSheetMetaData(Sheet) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelFileParser
 
remove() - Method in class org.eaglei.datatools.etl.server.extractor.FileIterator
 
replace(String, String, String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Given a string, replace all occurances of one string with another.

replaceColumnNamesWithColumnNumbers(InputStream, Map<String, Integer>) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
replaceExpressionWithURI(Statement[], Resource, String) - Static method in class org.eaglei.datatools.etl.utils.ETLUtils
 
RepoService - Class in org.eaglei.datatools.etl.server
 
RESOURCE_EXPRESSION_MATCHER - Static variable in class org.eaglei.datatools.etl.server.transformer.ResourceExpression
 
ResourceExpression - Class in org.eaglei.datatools.etl.server.transformer
 
ResourceExpression(String, Map<String, String>, Statement, Model, AnnotationFormModel, RepoService) - Constructor for class org.eaglei.datatools.etl.server.transformer.ResourceExpression
 
rnavName - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
rnavsComments - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
rowIterator() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.Data
 
RowIterator - Class in org.eaglei.datatools.etl.server.extractor.parsers
 
RowIterator(Data) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.RowIterator
 

S

saveStringToFile(String, String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Save the specifed string to the given file name
SENT_TO_CURATION_TRANSITION - Static variable in class org.eaglei.datatools.etl.server.RepoService
 
SERVICE_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
SERVICE_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
setEtlInputs(ETLInputs) - Static method in class org.eaglei.datatools.etl.server.ETLEntryPoint
 
setFailureCount(int) - Method in class org.eaglei.datatools.etl.server.FileStatistics
 
setPropertyFilePathAndgetNewRepoProvider(String) - Method in class org.eaglei.datatools.etl.server.RepoService
 
setSession(Session) - Method in class org.eaglei.datatools.etl.server.RepoService
 
setSucessCount(int) - Method in class org.eaglei.datatools.etl.server.FileStatistics
 
setTabData(Data) - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelAbstractions.ExcelTab
 
SOFTWARE_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
SOFTWARE_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings
 
SYNTAX - Static variable in interface org.eaglei.datatools.etl.server.transformer.Transformer
 

T

toFrontHack(JFrame, JFrame) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils
Moves a frame in front of another frame
toString() - Method in class org.eaglei.datatools.etl.server.extractor.parsers.excelparsers.ExcelAbstractions.ExcelTab
 
toString() - Method in class org.eaglei.datatools.interim.cores.Mapping
 
Transformer - Interface in org.eaglei.datatools.etl.server.transformer
Transform the Data into Rdf statements
TransformerImpl - Class in org.eaglei.datatools.etl.server.transformer
 
TransformerImpl(AnnotationFormModel, RepoService) - Constructor for class org.eaglei.datatools.etl.server.transformer.TransformerImpl
 
TransformException - Exception in org.eaglei.datatools.etl.server.exceptions
 
TransformException(String) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.TransformException
 
TransformException(String, Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.TransformException
 
TransformException(Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.TransformException
 
transformToRDF(Map<String, String>, File) - Method in interface org.eaglei.datatools.etl.server.transformer.Transformer
The dataMap is a java.util.Map with 'key' as Expression from map file and values is the value read from the extracted file using that expression.
transformToRDF(Map<String, String>, File) - Method in class org.eaglei.datatools.etl.server.transformer.TransformerImpl
 

U

UniversityConstants - Class in org.eaglei.datatools.interim.cores
 
UniversityConstants() - Constructor for class org.eaglei.datatools.interim.cores.UniversityConstants
 
UnsupportedFileException - Exception in org.eaglei.datatools.etl.server.exceptions
 
UnsupportedFileException(String) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.UnsupportedFileException
 
UnsupportedFileException(String, Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.UnsupportedFileException
 
UnsupportedFileException(Throwable) - Constructor for exception org.eaglei.datatools.etl.server.exceptions.UnsupportedFileException
 

V

validateDirectory(String, boolean) - Static method in class org.eaglei.datatools.interim.cores.OldFileUtils
Deprecated.  
validateDirectory(File, boolean) - Static method in class org.eaglei.datatools.interim.cores.OldFileUtils
Deprecated. Directory is valid if it exists, does not represent a file, and can be read.
Validation - Class in org.eaglei.datatools.etl.server.loader
 
Validation(RepoService) - Constructor for class org.eaglei.datatools.etl.server.loader.Validation
 
valueOf(String) - Static method in enum org.eaglei.datatools.etl.server.extractor.ExtractorFactory.ExtractorType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.datatools.etl.server.loader.Loader.Promote
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.datatools.interim.cores.Mapping.MappingType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.eaglei.datatools.interim.cores.Mapping.SourceType
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.eaglei.datatools.etl.server.extractor.ExtractorFactory.ExtractorType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.datatools.etl.server.loader.Loader.Promote
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.datatools.interim.cores.Mapping.MappingType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.eaglei.datatools.interim.cores.Mapping.SourceType
Returns an array containing the constants of this enum type, in the order they are declared.

W

workFlowTansistion(EIURI, Loader.Promote) - Method in class org.eaglei.datatools.etl.server.loader.Loader
Makes workflow transition
workFlowTansistion(EIURI, Loader.Promote) - Method in class org.eaglei.datatools.etl.server.RepoService
 
workFlowTansistion(List<EIURI>, Loader.Promote) - Method in class org.eaglei.datatools.etl.server.RepoService
 

X

XmlExtractor - Class in org.eaglei.datatools.etl.server.extractor
 
XmlExtractor(File, String) - Constructor for class org.eaglei.datatools.etl.server.extractor.XmlExtractor
 
XmlFileConfiguration - Class in org.eaglei.datatools.etl.server.extractor.parsers.xmlparser
 
XmlFileConfiguration() - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.xmlparser.XmlFileConfiguration
 
XmlFileParser - Class in org.eaglei.datatools.etl.server.extractor.parsers.xmlparser
 
XmlFileParser(File) - Constructor for class org.eaglei.datatools.etl.server.extractor.parsers.xmlparser.XmlFileParser
 

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