A C D E F G I L N O P R S T W

A

AnnotationFormModel - Class in org.eaglei.datatools.model

AnnotationFormModel(DataToolsEIOntModel) - Constructor for class org.eaglei.datatools.model.AnnotationFormModel

C

CREATOR - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

CREATOR_LABEL - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

CURATION_STATE - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

D

DATATOOLS_CONFIG - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

DataToolsEIOntModel - Class in org.eaglei.datatools.model

DataToolsEIOntModel(EIOntModel) - Constructor for class org.eaglei.datatools.model.DataToolsEIOntModel

datatoolsEIOntModel() - Method in class org.eaglei.datatools.model.DataToolsModelConfig

Create wrapper that has datatools specific behavior.

DataToolsModelConfig - Class in org.eaglei.datatools.model

DataToolsModelConfig() - Constructor for class org.eaglei.datatools.model.DataToolsModelConfig

DataToolsOntConstants - Class in org.eaglei.datatools.model

DataToolsOntConstants() - Constructor for class org.eaglei.datatools.model.DataToolsOntConstants

DataToolsOntModelUtils - Class in org.eaglei.datatools.model

Stores EIOntModel instance in a static for convenient access.

DataToolsOntModelUtils() - Constructor for class org.eaglei.datatools.model.DataToolsOntModelUtils

DataToolsOntModelUtils.EIOntModelWrapper - Class in org.eaglei.datatools.model

Override of getClass() method to check for invalid URI.

DataToolsOntModelUtils.EIOntModelWrapper(EIOntModel) - Constructor for class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

DC_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

DC_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

DEFAULT_DATATOOLS_CONFIG - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

DRAFT_STATE - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

DT_TERM_REQUEST - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

DT_TOP_TERM_REQUEST - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

E

EAGLE_I_APP_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EAGLE_I_APP_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EAGLE_I_DATA_URI_FRAGMENT - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EAGLE_I_DT_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EAGLE_I_DT_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EAGLE_I_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EAGLE_I_REPO_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EAGLE_I_REPO_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EAGLE_I_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EI_INSTRUMENT - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EI_LAB - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EI_SOFTWARE - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

EI_UNIVERSITY - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

F

findSubclassByLabel(String, String) - Method in class org.eaglei.datatools.model.AnnotationFormModel

FOAF_PERSON - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

FOAF_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

FOAF_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

G

generateStackTrace(Deque<String>) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

generateStackTrace(Deque<String>) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getClass(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getClass(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getClassDefinition(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getClassDefinition(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getClassDefinitions(List<EIURI>) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getClassDefinitions(List<EIURI>) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getEIOntModel() - Static method in class org.eaglei.datatools.model.DataToolsOntModelUtils

Get a reference to the EIOntModel.

getEquivalentClasses(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getEquivalentClasses(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getInstitutions() - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getInstitutions() - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getLabels(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getLabels(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getNonResourceBaseClasses() - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getNonResourceBaseClasses() - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getPreferredLabel(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getPreferredLabel(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getProperties(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getProperties(EIURI, String) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getProperties(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getPropertyDefinition(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getPropertyDefinition(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getPropertyDefinitions(List<EIURI>) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getPropertyDefinitions(List<EIURI>) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getSubClasses(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getSubClasses(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getSuperClass(EIClass) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getSuperClass(EIClass) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getSuperClasses(EIURI) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getSuperClasses(EIURI) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getTopLevelClasses() - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getTopLevelClasses() - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

getVersion() - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

getVersion() - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

I

IAO_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

IAO_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

INSTANCE - Static variable in class org.eaglei.datatools.model.DataToolsEIOntModel

This is a bad, bad hack.

isModelClassURI(String) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

isModelClassURI(String) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

L

labProperties - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

logger - Static variable in class org.eaglei.datatools.model.DataToolsEIOntModel

N

nameSpaceMap - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

NON_ONTOLOGY_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

O

OBI_OBJECTIVE - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

OBI_ORGANIZATION - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

OBO_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

org.eaglei.datatools.model - package org.eaglei.datatools.model

P

PUBLISHED_STATE - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

R

RDF_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

RDF_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

RDFS_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

RDFS_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

RO_PREFIX - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

RO_URI - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

S

SW_DATA - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

T

traverseDataModel(List<EIOntModel.Visitor>) - Method in class org.eaglei.datatools.model.DataToolsEIOntModel

traverseDataModel(List<EIOntModel.Visitor>) - Method in class org.eaglei.datatools.model.DataToolsOntModelUtils.EIOntModelWrapper

W

WITHDRAWN_STATE - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

WORKFLOW_OWNER - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

WORKFLOW_OWNER_LABEL - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

WORKFLOW_STATUS - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

WORKFLOW_STATUS_LABEL - Static variable in class org.eaglei.datatools.model.DataToolsOntConstants

A C D E F G I L N O P R S T W