A B C D E F G H I L M N O P Q R S T U V W

A

accessMap - Static variable in class org.eaglei.datatools.client.ui.TopPanel

add(Widget) - Method in class org.eaglei.datatools.client.ui.EagleiGlassPane

add(Widget) - Method in class org.eaglei.datatools.client.ui.HistoryRootPanel

addSessionListener(ClientRepositoryToolsManager.SessionListener) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

addWidget(String, Widget) - Method in class org.eaglei.datatools.client.ui.HistoryRootPanel

ALLOWED_ACTION_TRANSITIONS - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

ALLOWED_TRANSITIONS - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

ApplicationImages - Interface in org.eaglei.datatools.client.ui

The images used throughout the application.

aryInstance - Variable in class org.eaglei.datatools.client.ui.ResourcesGrid

B

BULK_OPERATION_ERROR - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

bulkOperation(WorkFlowAction) - Static method in class org.eaglei.datatools.client.ui.MainPanel

all the bulk workflow operation happens here

bulkPromote(EIInstance[], String, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

bulkPromote(String, String[], String) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelService

bulkPromote(String, String[], String, AsyncCallback<String[]>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

bulkPromote(String, String[], String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

bulkPublish(EIInstance[], ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

bulkReturnToDraft(EIInstance[], ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

bulkSendToCuration(EIInstance[], ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

bulkSendToCuration() - Static method in class org.eaglei.datatools.client.ui.MainPanel

Send the bulk resource to Curation

bulkWithdraw(EIInstance[], ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

C

canEdit(String) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

canPerform(String, String) - Method in class org.eaglei.datatools.client.ui.WorkFlowConstants

canUserChangeState(String) - Static method in class org.eaglei.datatools.client.Datatools

canUserChangeState(EIInstance, String) - Static method in class org.eaglei.datatools.client.Datatools

canUserChangeState(String, String) - Static method in class org.eaglei.datatools.client.Datatools

changeDisplayAccordingToView(String) - Method in class org.eaglei.datatools.client.ui.FilterPanel

changeDisplayByToken(String, boolean) - Method in class org.eaglei.datatools.client.ui.HistoryRootPanel

all the logic of transistion when back and forward buttons are pressed happens here

claim(EIInstance, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

claim(String, String, String, AsyncCallback<String>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

claim(String, String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

classChooser - Static variable in class org.eaglei.datatools.client.ui.FormUtils

ClientOntologyToolsManager - Class in org.eaglei.datatools.client.rpc

Maintains a client-side cache of EIClasses.

ClientOntologyToolsManager.DefinitionsCallback - Interface in org.eaglei.datatools.client.rpc

ClientOntologyToolsManager.EIClassCallback - Interface in org.eaglei.datatools.client.rpc

ClientOntologyToolsManager.EISubClassCallback - Interface in org.eaglei.datatools.client.rpc

ClientOntologyToolsManager.EISuperClassCallback - Interface in org.eaglei.datatools.client.rpc

ClientOntologyToolsManager.PropertyCallback - Interface in org.eaglei.datatools.client.rpc

ClientOntologyToolsManager.TopLevelClassesCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager - Class in org.eaglei.datatools.client.rpc

Maintains a client-side cache of EIInstance.

ClientRepositoryToolsManager.DeleteInstanceCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.EIInstanceCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.EIInstancesCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.EIInstancesForLabCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.FilterInstancesCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.IdCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.LoginRequiredCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.NewInstanceCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.QueryEIInstancesCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.ResultsCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.SessionListener - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.UserCallback - Interface in org.eaglei.datatools.client.rpc

ClientRepositoryToolsManager.WFCallback - Interface in org.eaglei.datatools.client.rpc

COMMENTS - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

ControlPanel - Class in org.eaglei.datatools.client.ui

Control panel widget

ControlPanel() - Constructor for class org.eaglei.datatools.client.ui.ControlPanel

copyResource() - Static method in class org.eaglei.datatools.client.ui.MainPanel

This is called in response to the 'Copy Resource' option selected from the Filter/Control Panel

createInstance(EIInstance, ClientRepositoryToolsManager.NewInstanceCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

createInstance(EIInstance, AsyncCallback) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

createInstance(String, EIInstance, AsyncCallback) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

createInstance(String, EIInstance) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

createInstance(EIInstance) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

Deprecated.

createInstanceRow(int, EIInstance) - Method in class org.eaglei.datatools.client.ui.ResourcesGrid

createLabelforView(EIEntity, Set<String>, String, boolean) - Static method in class org.eaglei.datatools.client.ui.FormUtils

createRadioButon(EIEntity, String) - Static method in class org.eaglei.datatools.client.ui.FormUtils

Creates a RadioButton

createTermWidget(EIClass, EIClass, EIEntity, String) - Static method in class org.eaglei.datatools.client.ui.FormUtils

Creates a Term widget that displays the subclasses in a hierarchical form in a drop down list

createTextField(EIEntity, Set<String>, String, boolean) - Static method in class org.eaglei.datatools.client.ui.FormUtils

Creates a Text field from the given entity value is passed when the formType is 'edit'

CURATION_ACTION - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

CURATION_STATE - Static variable in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

CURATION_STATE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

CURATION_URI - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

CurationAction - Static variable in class org.eaglei.datatools.client.ui.WorkFlowAction

CURATOR_NOTE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

currentUser - Static variable in class org.eaglei.datatools.client.Datatools

D

dataList - Static variable in class org.eaglei.datatools.client.ui.FormUtils

dataListDialog - Static variable in class org.eaglei.datatools.client.ui.FormUtils

dataPanel - Static variable in class org.eaglei.datatools.client.ui.MainPanel

Datatools - Class in org.eaglei.datatools.client

This is the Entry point class, mainly responsible for creating the Top level Tabs

Datatools() - Constructor for class org.eaglei.datatools.client.Datatools

DATATOOLS_CONTROLS - Static variable in class org.eaglei.datatools.client.ui.MainPanel

DATATOOLS_FILTER - Static variable in class org.eaglei.datatools.client.ui.MainPanel

DATATOOLS_SESSION_ID - Static variable in class org.eaglei.datatools.client.DatatoolsCookies

DATATOOLS_USER_COOKIE_ID - Static variable in class org.eaglei.datatools.client.DatatoolsCookies

DATATOOLS_USER_URI_ID - Static variable in class org.eaglei.datatools.client.DatatoolsCookies

DatatoolsCookies - Class in org.eaglei.datatools.client

DatatoolsCookies() - Constructor for class org.eaglei.datatools.client.DatatoolsCookies

deleteInstance(EIInstance, ClientRepositoryToolsManager.DeleteInstanceCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

deleteInstance(EIInstance, AsyncCallback) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

deleteInstance(String, EIInstance, AsyncCallback) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

deleteInstance(String, EIInstance) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

deleteInstance(EIInstance) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

Deprecated.

dialogFormName - Static variable in class org.eaglei.datatools.client.ui.FormUtils

dialogSubType - Static variable in class org.eaglei.datatools.client.ui.FormUtils

displayDefaultFields(EIClass, String, String, EIURI, boolean) - Static method in class org.eaglei.datatools.client.ui.FormUtils

Every form will have ' ' & 'Sub-Type' fields even though they are not defined in the ontology When the user selects an item from the Sub-type drop down, the properties displayed on the form will change depending upon the class of the selected item

displayFormFields(EIClass, EIInstance, boolean) - Static method in class org.eaglei.datatools.client.ui.FormUtils

Gets the class properties and displays appropriate UI field based on the property type

displayNonOntologyProperties(EIInstance) - Static method in class org.eaglei.datatools.client.ui.FormUtils

Displays the properties that are removed from the new Ontology but still have some values associated

doAddNewLabLink() - Method in class org.eaglei.datatools.client.ui.LeftListPanel

doClaimGrid(int) - Static method in class org.eaglei.datatools.client.ui.MainPanel

doDeleteGrid(int) - Static method in class org.eaglei.datatools.client.ui.MainPanel

doEditGrid(int) - Static method in class org.eaglei.datatools.client.ui.MainPanel

doFilterPanelGoButton(String, String, String) - Static method in class org.eaglei.datatools.client.ui.MainPanel

doFilterPanelGoButtonWhenRefresh(String, String, String) - Static method in class org.eaglei.datatools.client.ui.MainPanel

doLabs() - Method in class org.eaglei.datatools.client.ui.LeftListPanel

doLabTable(int, int) - Method in class org.eaglei.datatools.client.ui.MainPanel

This method is called in response to the clicks on the Laboratory Panel

doOnClick(ClickEvent) - Method in class org.eaglei.datatools.client.ui.OntologyDropdown

Popup display click event.

doResources() - Method in class org.eaglei.datatools.client.ui.LeftListPanel

doSubLinksOfResource(int, int) - Method in class org.eaglei.datatools.client.ui.MainPanel

doViewGrid(int) - Static method in class org.eaglei.datatools.client.ui.MainPanel

doWithdrawGrid(int) - Static method in class org.eaglei.datatools.client.ui.MainPanel

DRAFT_ACTION - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

DRAFT_STATE - Static variable in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

DRAFT_STATE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

DRAFT_URI - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

DUPLICATE_ACTION - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

DURATION - Static variable in class org.eaglei.datatools.client.DatatoolsCookies

E

EAGLE_I_REPO_URI - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

EagleiGlassPane - Class in org.eaglei.datatools.client.ui

EagleiGlassPane() - Constructor for class org.eaglei.datatools.client.ui.EagleiGlassPane

EagleIPopup - Class in org.eaglei.datatools.client.ui

EagleIPopup() - Constructor for class org.eaglei.datatools.client.ui.EagleIPopup

eClass - Static variable in class org.eaglei.datatools.client.ui.MainPanel

EDIT_ACTION - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

editResource() - Static method in class org.eaglei.datatools.client.ui.MainPanel

This is called in response to the 'Edit' option selected from the Filter/Control Panel

eiInstance - Static variable in class org.eaglei.datatools.client.ui.FormsPanel

EIQuery(String, String, AsyncCallback<List<EIInstance>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

EIQuery(String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

eiURI - Static variable in class org.eaglei.datatools.client.ui.FormsPanel

Emailnot_EmptyandSpaces(String) - Static method in class org.eaglei.datatools.client.ui.Validations

EmptybutNot_NumbersandSplChars(String) - Static method in class org.eaglei.datatools.client.ui.Validations

executeInnerWidgetTransition(String, HistoryRootPanel.Action) - Method in class org.eaglei.datatools.client.ui.HistoryRootPanel

similar to Dhtml transisiton

F

fileupload - Variable in class org.eaglei.datatools.client.ui.FileUploadWidget

FileUploadWidget - Class in org.eaglei.datatools.client.ui

FileUploadWidget() - Constructor for class org.eaglei.datatools.client.ui.FileUploadWidget

filterGrid(List<EIInstance>, FilterPanel, String) - Static method in class org.eaglei.datatools.client.ui.MainPanel

This method is called in response to the filter options selected by the user on the FilterPanel

FilterPanel - Class in org.eaglei.datatools.client.ui

FilterPanel() - Constructor for class org.eaglei.datatools.client.ui.FilterPanel

FilterPanel(String) - Constructor for class org.eaglei.datatools.client.ui.FilterPanel

FilterPanel(String, boolean) - Constructor for class org.eaglei.datatools.client.ui.FilterPanel

FilterPanel(String, SharedClassChooser<OntologyDropdown>) - Constructor for class org.eaglei.datatools.client.ui.FilterPanel

filterPanel - Static variable in class org.eaglei.datatools.client.ui.MainPanel

FORM_ACTIONS_TITLE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

formName - Static variable in class org.eaglei.datatools.client.ui.FormUtils

FormsPanel - Class in org.eaglei.datatools.client.ui

Creates a Form Panel.

FormsPanel(String, String) - Constructor for class org.eaglei.datatools.client.ui.FormsPanel

FormsPanel() - Constructor for class org.eaglei.datatools.client.ui.FormsPanel

FormUtils - Class in org.eaglei.datatools.client.ui

This is a utility class for creating form and form fields

FormUtils() - Constructor for class org.eaglei.datatools.client.ui.FormUtils

frmPanel - Variable in class org.eaglei.datatools.client.ui.FileUploadWidget

G

generateEditForm(String) - Method in class org.eaglei.datatools.client.ui.FormsPanel

This method creates a form to edit.

generateNewForm() - Method in class org.eaglei.datatools.client.ui.FormsPanel

Generates a new form based on the URI passed.

generateViewForm(EIInstance) - Method in class org.eaglei.datatools.client.ui.FormsPanel

This method creates a form in 'view' mode.

getAlertMessage(WorkFlowAction) - Static method in class org.eaglei.datatools.client.ui.WorkFlowAction

getAllResources(String, ClientRepositoryToolsManager.EIInstancesCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getAllResources(String, AsyncCallback<List<EIInstance>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

getAllResources(String, String, AsyncCallback<List<EIInstance>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

getAllResources(String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getAllResources(String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getChkBoxRefAry() - Method in class org.eaglei.datatools.client.ui.ResourcesGrid

getClassChooser() - Method in class org.eaglei.datatools.client.ui.FilterPanel

getClassDefinitions(List<EIClass>, ClientOntologyToolsManager.DefinitionsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

getClassDefinitions(List<EIURI>) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelService

getClassDefinitions(List<EIURI>, AsyncCallback<List<String>>) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelServiceAsync

getClassDefinitions(List<EIURI>) - Method in class org.eaglei.datatools.server.OntologyToolsModelServlet

getEditableStates() - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getEIClass(EIURI, ClientOntologyToolsManager.EIClassCallback) - Method in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

getEIClass(EIURI) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelService

getEIClass(EIURI, AsyncCallback<EIClass>) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelServiceAsync

getEIClass(EIURI) - Method in class org.eaglei.datatools.server.OntologyToolsModelServlet

getEmptyEIInstance(EIURI, EIEntity, ClientRepositoryToolsManager.EIInstanceCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getEmptyEIInstance(String, EIURI, EIEntity, AsyncCallback<EIInstance>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

getEmptyEIInstance(EIURI, EIEntity, AsyncCallback<EIInstance>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

getEmptyEIInstance(EIURI, EIEntity) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getEmptyEIInstance(String, EIURI, EIEntity) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getFilterQuery(String, EIURI, EIURI, EIURI, ClientRepositoryToolsManager.FilterInstancesCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getFilterQuery(String, EIURI, EIURI, EIURI, AsyncCallback<List<EIInstance>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

getFilterQuery(String, EIURI, EIURI, EIURI) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getFromState() - Method in class org.eaglei.datatools.client.ui.WorkFlowAction

getInstance(EIURI, ClientRepositoryToolsManager.EIInstanceCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getInstance(EIURI, AsyncCallback<EIInstance>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

getInstance(String, EIURI, AsyncCallback<EIInstance>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

getInstance() - Static method in class org.eaglei.datatools.client.ui.HistoryRootPanel

getInstance(EIURI) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getInstance(String, EIURI) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getInstanceInGridByRow(int) - Method in class org.eaglei.datatools.client.ui.ResourcesGrid

getInstancesForLab(String, String, ClientRepositoryToolsManager.EIInstancesForLabCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getInstancesForLab(String, String, String, AsyncCallback<List<EIInstance>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

getInstancesForLab(String, String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getName() - Method in class org.eaglei.datatools.client.ui.WorkFlowAction

getNewInstanceID(int, ClientRepositoryToolsManager.IdCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getNewInstanceID(String, int, AsyncCallback<List<EIURI>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

getNewInstanceID(int, AsyncCallback<List<EIURI>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

getNewInstanceID(int) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getNewInstanceID(String, int) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getProperties(EIClass, ClientOntologyToolsManager.PropertyCallback) - Method in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

Call this to ensure that the properties list of a given EIClass has been populated.

getProperties(EIClass, String, ClientOntologyToolsManager.PropertyCallback) - Method in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

getProperties(EIURI) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelService

getProperties(EIURI, String) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelService

getProperties(EIURI, AsyncCallback<List<EIProperty>>) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelServiceAsync

getProperties(EIURI, String, AsyncCallback<List<EIProperty>>) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelServiceAsync

getProperties(EIURI) - Method in class org.eaglei.datatools.server.OntologyToolsModelServlet

getProperties(EIURI, String) - Method in class org.eaglei.datatools.server.OntologyToolsModelServlet

getResourcesOfClass(String, EIURI, ClientRepositoryToolsManager.EIInstancesCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getResourcesOfClass(String, EIURI, AsyncCallback<List<EIInstance>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

getResourcesOfClass(String, String, EIURI, AsyncCallback<List<EIInstance>>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

getResourcesOfClass(String, EIURI) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getResourcesOfClass(String, String, EIURI) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

getSession() - Static method in class org.eaglei.datatools.client.DatatoolsCookies

getStatusType() - Method in class org.eaglei.datatools.client.ui.WorkFlowConstants

getStatusType(String) - Method in class org.eaglei.datatools.client.ui.WorkFlowConstants

getStatusTypeByStatusURI(String) - Method in class org.eaglei.datatools.client.ui.WorkFlowConstants

getStatusURI(String) - Method in class org.eaglei.datatools.client.ui.WorkFlowConstants

getSubClasses(EIURI, boolean, ClientOntologyToolsManager.EISubClassCallback) - Method in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

getSubClasses(EIURI, boolean) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelService

getSubClasses(EIURI, boolean, AsyncCallback<List<EIClass>>) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelServiceAsync

getSubClasses(EIURI, boolean) - Method in class org.eaglei.datatools.server.OntologyToolsModelServlet

getSuperClass(EIClass, ClientOntologyToolsManager.EISuperClassCallback) - Method in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

getSuperClass(EIClass) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelService

getSuperClass(EIClass, AsyncCallback<EIClass>) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelServiceAsync

getSuperClass(EIClass) - Method in class org.eaglei.datatools.server.OntologyToolsModelServlet

getTopLevelClasses(ClientOntologyToolsManager.TopLevelClassesCallback) - Method in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

getTopLevelClasses() - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelService

getTopLevelClasses(AsyncCallback<List<EIClass>>) - Method in interface org.eaglei.datatools.client.rpc.OntologyToolsModelServiceAsync

getTopLevelClasses() - Method in class org.eaglei.datatools.server.OntologyToolsModelServlet

getToState() - Method in class org.eaglei.datatools.client.ui.WorkFlowAction

getUserName() - Static method in class org.eaglei.datatools.client.DatatoolsCookies

getUserUri() - Static method in class org.eaglei.datatools.client.DatatoolsCookies

getWFStates(String, ClientRepositoryToolsManager.WFCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

getWFStates(String, String, AsyncCallback<String[]>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

getWFStates(String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

glasspane - Static variable in class org.eaglei.datatools.client.ui.MainPanel

H

handleLabs() - Static method in class org.eaglei.datatools.client.ui.MainPanel

This is called when the My Laboratories link is clicked

handleLoginRequired() - Static method in class org.eaglei.datatools.client.ui.MainPanel

handleObjectProperty(List<EIClass>, EIEntity, Set<EIURI>) - Static method in class org.eaglei.datatools.client.ui.FormUtils

This method deals with an Object type property.

handleResources() - Static method in class org.eaglei.datatools.client.ui.MainPanel

This is called when the My Resources link is clicked

hasSession() - Static method in class org.eaglei.datatools.client.DatatoolsCookies

hasUserName() - Static method in class org.eaglei.datatools.client.DatatoolsCookies

hasUserUri() - Static method in class org.eaglei.datatools.client.DatatoolsCookies

hide() - Method in class org.eaglei.datatools.client.ui.EagleiGlassPane

HistoryRootPanel - Class in org.eaglei.datatools.client.ui

HistoryRootPanel.Action - Enum in org.eaglei.datatools.client.ui

I

init() - Method in class org.eaglei.datatools.server.OntologyToolsModelServlet

init() - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

INSTANCE - Static variable in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

INSTANCE - Static variable in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

instanceUri - Static variable in class org.eaglei.datatools.client.ui.MainPanel

INVALID_VALUE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

isDialog - Static variable in class org.eaglei.datatools.client.ui.FormUtils

IsEmailBox(String) - Static method in class org.eaglei.datatools.client.ui.Validations

isEmailValid - Static variable in class org.eaglei.datatools.client.ui.FormUtils

isFormValid() - Static method in class org.eaglei.datatools.client.ui.FormUtils

isLabsLinkSelected - Static variable in class org.eaglei.datatools.client.ui.LeftListPanel

isLoggedIn() - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

isOnline(AsyncCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

isOnline(AsyncCallback) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

isOnline() - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

isPhoneValid - Static variable in class org.eaglei.datatools.client.ui.FormUtils

isRefresh - Static variable in class org.eaglei.datatools.client.Datatools

L

LABEL_REQUIRED - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

labsLink - Static variable in class org.eaglei.datatools.client.ui.LeftListPanel

labsTable - Static variable in class org.eaglei.datatools.client.ui.LeftListPanel

labUri - Static variable in class org.eaglei.datatools.client.ui.FormsPanel

labUri - Static variable in class org.eaglei.datatools.client.ui.MainPanel

LeftListPanel - Class in org.eaglei.datatools.client.ui

LeftListPanel() - Constructor for class org.eaglei.datatools.client.ui.LeftListPanel

listPanel - Static variable in class org.eaglei.datatools.client.ui.MainPanel

LOADING - Static variable in interface org.eaglei.datatools.client.ui.ApplicationImages

logger - Static variable in class org.eaglei.datatools.server.OntologyToolsModelServlet

logIn(String, String, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

login(String, String, AsyncCallback<String[]>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

login(String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

loginRequired() - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.LoginRequiredCallback

logOut() - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

logout(AsyncCallback) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

logout() - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

M

mainPanel - Static variable in class org.eaglei.datatools.client.Datatools

mainPanel - Variable in class org.eaglei.datatools.client.ui.FileUploadWidget

MainPanel - Class in org.eaglei.datatools.client.ui

MainPanel() - Constructor for class org.eaglei.datatools.client.ui.MainPanel

modelService - Static variable in class org.eaglei.datatools.client.rpc.ClientOntologyToolsManager

N

NO_CURATION_MESSAGE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

NO_DRAFT_MESSAGE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

NO_PASSWORD - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

NO_RETURNTODRAFT - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

NO_USER - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

NO_WITHDRAWN - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

nonOntLiteralList - Static variable in class org.eaglei.datatools.client.ui.FormUtils

nonOntResourceList - Static variable in class org.eaglei.datatools.client.ui.FormUtils

not_EmptyandNumbersandSplChars(String) - Static method in class org.eaglei.datatools.client.ui.Validations

not_EmptyandSpaces(String) - Static method in class org.eaglei.datatools.client.ui.Validations

not_EmptyPhoneFormat(String) - Static method in class org.eaglei.datatools.client.ui.Validations

NOT_IN_LIST - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

NumbersNotAllowed(String) - Static method in class org.eaglei.datatools.client.ui.Validations

O

objList - Static variable in class org.eaglei.datatools.client.ui.FormUtils

objListDialog - Static variable in class org.eaglei.datatools.client.ui.FormUtils

onFailure(String) - Method in interface org.eaglei.datatools.client.rpc.ClientOntologyToolsManager.EIClassCallback

onLogIn(String, String) - Method in class org.eaglei.datatools.client.Datatools

onLogIn(String, String) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.SessionListener

onLogIn(String, String) - Method in class org.eaglei.datatools.client.ui.FormsPanel

onLogIn(String, String) - Method in class org.eaglei.datatools.client.ui.LeftListPanel

onLogIn(String, String) - Method in class org.eaglei.datatools.client.ui.MainPanel

onLogIn(String, String) - Method in class org.eaglei.datatools.client.ui.TopPanel

onLogOut() - Method in class org.eaglei.datatools.client.Datatools

onLogOut() - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.SessionListener

onLogOut() - Method in class org.eaglei.datatools.client.ui.FormsPanel

onLogOut() - Method in class org.eaglei.datatools.client.ui.LeftListPanel

onLogOut() - Method in class org.eaglei.datatools.client.ui.MainPanel

onLogOut() - Method in class org.eaglei.datatools.client.ui.TopPanel

OnlyNumbersAllowed(String) - Static method in class org.eaglei.datatools.client.ui.Validations

OnlyPhoneFormat(String) - Static method in class org.eaglei.datatools.client.ui.Validations

onModuleLoad() - Method in class org.eaglei.datatools.client.Datatools

Entry point method

onResize(ResizeEvent) - Method in class org.eaglei.datatools.client.ui.EagleiGlassPane

onSuccess(List<EIClass>) - Method in interface org.eaglei.datatools.client.rpc.ClientOntologyToolsManager.DefinitionsCallback

onSuccess(EIClass) - Method in interface org.eaglei.datatools.client.rpc.ClientOntologyToolsManager.EIClassCallback

onSuccess(List<EIClass>) - Method in interface org.eaglei.datatools.client.rpc.ClientOntologyToolsManager.EISubClassCallback

onSuccess(EIClass) - Method in interface org.eaglei.datatools.client.rpc.ClientOntologyToolsManager.EISuperClassCallback

onSuccess(EIClass) - Method in interface org.eaglei.datatools.client.rpc.ClientOntologyToolsManager.PropertyCallback

onSuccess(List<EIClass>) - Method in interface org.eaglei.datatools.client.rpc.ClientOntologyToolsManager.TopLevelClassesCallback

onSuccess(Object) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.DeleteInstanceCallback

onSuccess(EIInstance) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.EIInstanceCallback

onSuccess(List<EIInstance>) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.EIInstancesCallback

onSuccess(List<EIInstance>) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.EIInstancesForLabCallback

onSuccess(List<EIInstance>) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.FilterInstancesCallback

onSuccess(List<EIURI>) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.IdCallback

onSuccess(Object) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.NewInstanceCallback

onSuccess(List<EIInstance>) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.QueryEIInstancesCallback

onSuccess(String[]) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.ResultsCallback

onSuccess(String) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.ResultsCallback

onSuccess(String[]) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.UserCallback

onSuccess(String[]) - Method in interface org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager.WFCallback

OntologyDropdown - Class in org.eaglei.datatools.client.ui

OntologyDropdown() - Constructor for class org.eaglei.datatools.client.ui.OntologyDropdown

OntologyToolsModelService - Interface in org.eaglei.datatools.client.rpc

The client side stub for the RPC service.

OntologyToolsModelServiceAsync - Interface in org.eaglei.datatools.client.rpc

The async counterpart of DataToolsModelService.

OntologyToolsModelServlet - Class in org.eaglei.datatools.server

OntologyToolsModelServlet() - Constructor for class org.eaglei.datatools.server.OntologyToolsModelServlet

org.eaglei.datatools.client - package org.eaglei.datatools.client

org.eaglei.datatools.client.rpc - package org.eaglei.datatools.client.rpc

org.eaglei.datatools.client.ui - package org.eaglei.datatools.client.ui

org.eaglei.datatools.server - package org.eaglei.datatools.server

P

PLEASE_LOGIN - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

populateChildList(TreeItem) - Method in class org.eaglei.datatools.client.ui.OntologyDropdown

populateChildList(TreeItem, OntologyDropdownBase.ResourceTreeWidget, List<EIClass>) - Method in class org.eaglei.datatools.client.ui.OntologyDropdown

promote(EIInstance, String, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

promote(String, String, String, AsyncCallback<String>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

promote(String, String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

publish(EIInstance, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

publish() - Static method in class org.eaglei.datatools.client.ui.MainPanel

Publish the resource

PUBLISH_ACTION - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

PUBLISH_STATE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

PUBLISH_URI - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

PublishAction - Static variable in class org.eaglei.datatools.client.ui.WorkFlowAction

PUBLISHED_STATE - Static variable in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

Q

query(String, AsyncCallback<StringBuffer>) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

query(String, String, AsyncCallback<String>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

query(String, AsyncCallback<String>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

query(String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

query(String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

R

removeCookies() - Static method in class org.eaglei.datatools.client.DatatoolsCookies

RepositoryToolsModelService - Interface in org.eaglei.datatools.client.rpc

The GWT client side stub for the RPC service to the repository

RepositoryToolsModelServiceAsync - Interface in org.eaglei.datatools.client.rpc

The client side stub for the RPC service.

RepositoryToolsModelServlet - Class in org.eaglei.datatools.server

RepositoryToolsModelServlet() - Constructor for class org.eaglei.datatools.server.RepositoryToolsModelServlet

RESOURCE_COLUMN_NAMES - Static variable in class org.eaglei.datatools.client.ui.ResourcesGrid

resourceClass - Static variable in class org.eaglei.datatools.client.ui.FormsPanel

ResourcesGrid - Class in org.eaglei.datatools.client.ui

ResourcesGrid(String, FilterPanel, String) - Constructor for class org.eaglei.datatools.client.ui.ResourcesGrid

ResourcesGrid(String, String, boolean) - Constructor for class org.eaglei.datatools.client.ui.ResourcesGrid

Creates a grid with resources of a particular lab

ResourcesGrid(List<EIInstance>, String) - Constructor for class org.eaglei.datatools.client.ui.ResourcesGrid

ResourcesGrid(List<EIInstance>) - Constructor for class org.eaglei.datatools.client.ui.ResourcesGrid

resourcesLink - Static variable in class org.eaglei.datatools.client.ui.LeftListPanel

resourcesTable - Static variable in class org.eaglei.datatools.client.ui.LeftListPanel

resourceTypes - Static variable in class org.eaglei.datatools.client.ui.LeftListPanel

retrieveLabel(EIURI, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

retrieveLabel(String, EIURI, AsyncCallback<String>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

retrieveLabel(String, EIURI) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

returnToDraft(EIInstance, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

returnToDraft() - Static method in class org.eaglei.datatools.client.ui.MainPanel

Return the resource to draft

ReturnToDraftAction - Static variable in class org.eaglei.datatools.client.ui.WorkFlowAction

S

SAVE_ACTION - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

SAVE_SUCCESS - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

SAVE_SUCCESS_LIGHTBOX - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

saveForm() - Method in class org.eaglei.datatools.client.ui.FormsPanel

saveForm() - Static method in class org.eaglei.datatools.client.ui.MainPanel

SELECT_MESSAGE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

sendToCuration(EIInstance, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

sendToCuration() - Static method in class org.eaglei.datatools.client.ui.MainPanel

Send the resource to Curation

setChkBoxRefAry(CheckBox[]) - Method in class org.eaglei.datatools.client.ui.ResourcesGrid

setClassChooser(SharedClassChooser<OntologyDropdown>) - Method in class org.eaglei.datatools.client.ui.FilterPanel

setLoggedOut() - Method in class org.eaglei.datatools.client.ui.FormsPanel

setResource(EIClass) - Method in class org.eaglei.datatools.client.ui.OntologyDropdown

ShouldNotBeEmpty(String) - Static method in class org.eaglei.datatools.client.ui.Validations

show() - Method in class org.eaglei.datatools.client.ui.EagleiGlassPane

SpaceNotAllowed(String) - Static method in class org.eaglei.datatools.client.ui.Validations

SplChar_NotAllowed(String) - Static method in class org.eaglei.datatools.client.ui.Validations

STYLE - Static variable in class org.eaglei.datatools.client.ui.EagleiGlassPane

subType - Static variable in class org.eaglei.datatools.client.ui.FormUtils

T

testPanel - Static variable in class org.eaglei.datatools.client.ui.FormsPanel

TextNotAllowed(String) - Static method in class org.eaglei.datatools.client.ui.Validations

TopPanel - Class in org.eaglei.datatools.client.ui

The top panel, header logo, sign in, etc

TopPanel() - Constructor for class org.eaglei.datatools.client.ui.TopPanel

U

updateInstance(EIInstance, String, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

updateInstance(EIInstance, String, AsyncCallback<String>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

updateInstance(String, EIInstance, String, AsyncCallback<String>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

updateInstance(String, EIInstance, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

updateInstance(EIInstance, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

Deprecated.

uploadInstances(String, String, AsyncCallback<Void>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

uploadInstances(String, AsyncCallback<Void>) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

Deprecated.

uploadInstances(String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

uploadInstances(String, String) - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

userUri - Static variable in class org.eaglei.datatools.client.ui.MainPanel

V

Validations - Class in org.eaglei.datatools.client.ui

Validations() - Constructor for class org.eaglei.datatools.client.ui.Validations

valueOf(String) - Static method in enum org.eaglei.datatools.client.ui.HistoryRootPanel.Action

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.eaglei.datatools.client.ui.HistoryRootPanel.Action

Returns an array containing the constants of this enum type, in the order they are declared.

vp - Static variable in class org.eaglei.datatools.client.ui.FormsPanel

W

wfStates - Static variable in class org.eaglei.datatools.client.ui.TopPanel

whoami(ClientRepositoryToolsManager.UserCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

whoami(AsyncCallback) - Method in interface org.eaglei.datatools.client.rpc.RepositoryToolsModelServiceAsync

whoami() - Method in class org.eaglei.datatools.server.RepositoryToolsModelServlet

withdraw(EIInstance, ClientRepositoryToolsManager.ResultsCallback) - Method in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

withdraw() - Static method in class org.eaglei.datatools.client.ui.MainPanel

Withdraw the resource

WITHDRAW_ACTION - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

WITHDRAW_STATE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

WITHDRAW_URI - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

WithdrawAction - Static variable in class org.eaglei.datatools.client.ui.WorkFlowAction

WITHDRAWN_STATE - Static variable in class org.eaglei.datatools.client.rpc.ClientRepositoryToolsManager

WORKFLOW_ACTIONS_TITLE - Static variable in class org.eaglei.datatools.client.ui.WorkFlowConstants

WorkFlowAction - Class in org.eaglei.datatools.client.ui

WorkFlowConstants - Class in org.eaglei.datatools.client.ui

WorkFlowConstants() - Constructor for class org.eaglei.datatools.client.ui.WorkFlowConstants

A B C D E F G H I L M N O P Q R S T U V W