A C D E F G I L N O P R S T W

A

allTypesPattern(boolean) - Static method in class org.eaglei.services.repository.SPARQLQueryUtil

ANY_PREDICATE_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

C

CENTRAL_SEARCH_NODEID - Static variable in class org.eaglei.services.InstitutionRegistry

computeHostURL(String, String) - Static method in class org.eaglei.services.repository.RepositoryHttpConfig

Generates a repository host url using a tier and institution subdomain.

createHttpClient(String, String) - Static method in class org.eaglei.services.repository.RepositoryHttpConfig

Convenience utility method for constructing a default http client suitable for connecting to the repository.

createReferencedByInstances(EIOntModel, EIInstance, ResultSet) - Static method in class org.eaglei.services.repository.SPARQLQueryUtil

CREATOR - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

CREATOR_LABEL - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

CURATION_ENTITY - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

CURATION_STATE - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

CURATION_STATE_LABEL - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

CURATION_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

D

DATATOOLS_CONFIG - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DATE_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

DC_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DC_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DEFAULT_DATATOOLS_CONFIG - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DEFAULT_NG - Static variable in class org.eaglei.services.repository.RepositoryHttpConfig

DRAFT_ENTITY - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DRAFT_STATE - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DRAFT_STATE_LABEL - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DRAFT_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DT_TERM_REQUEST - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

DT_TOP_TERM_REQUEST - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

E

EAGLE_I_APP_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLE_I_APP_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLE_I_DATA_URI_FRAGMENT - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLE_I_DT_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLE_I_DT_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLE_I_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLE_I_REPO_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLE_I_REPO_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLE_I_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EAGLEI_REPOSITORY_PASSWORD_PROPERTY - Static variable in class org.eaglei.services.repository.RepositoryHttpConfig

EAGLEI_REPOSITORY_USERNAME_PROPERTY - Static variable in class org.eaglei.services.repository.RepositoryHttpConfig

EAGLEI_SUBDOMAIN_PROPERTY - Static variable in class org.eaglei.services.InstitutionRegistry

EAGLEI_TIER_PROPERTY - Static variable in class org.eaglei.services.InstitutionRegistry

EI_INSTRUMENT - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EI_LAB - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EI_SOFTWARE - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

EI_UNIVERSITY - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

F

FOAF_PERSON - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

FOAF_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

FOAF_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

G

getEntity() - Method in class org.eaglei.services.NodeConfig

getHarvestUrl() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

getHostURL() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

getInstance(String, EIURI) - Method in class org.eaglei.services.repository.RepositoryInstanceProvider

getInstanceUrl() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

getInstitution(EIURI) - Method in class org.eaglei.services.InstitutionRegistry

Lookup an institution entity by uri.

getInstitution() - Method in class org.eaglei.services.InstitutionRegistry

Get the institution entity of the application's node.

getInstitutions() - Method in class org.eaglei.services.InstitutionRegistry

getLabel() - Method in class org.eaglei.services.NodeConfig

getLocalNodeId() - Method in class org.eaglei.services.InstitutionRegistry

getLogoutUrl() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

getNodeConfigs() - Method in class org.eaglei.services.InstitutionRegistry

getNodeId() - Method in class org.eaglei.services.NodeConfig

getReferencedByQuery(EIURI) - Static method in class org.eaglei.services.repository.SPARQLQueryUtil

getRepositoryHostUrl() - Method in class org.eaglei.services.NodeConfig

getRepositoryHttpConfig() - Method in class org.eaglei.services.InstitutionRegistry

Gets a RepositoryHttpConfig for this institutional node.

getRepositoryHttpConfig(String) - Method in class org.eaglei.services.InstitutionRegistry

getSearchHttpClient() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

getSearchPassword() - Method in class org.eaglei.services.NodeConfig

getSearchPassword() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

getSearchUsername() - Method in class org.eaglei.services.NodeConfig

getSearchUsername() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

getSession(String) - Method in class org.eaglei.services.repository.RepositorySecurityProvider

getSparqlUrl() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

getStatusEntity(EIURI) - Static method in class org.eaglei.services.repository.SPARQLQueryUtil

getStringFromInputStream(InputStream) - Static method in class org.eaglei.services.repository.ProviderUtils

getTier() - Method in class org.eaglei.services.InstitutionRegistry

getUri() - Method in class org.eaglei.services.NodeConfig

getUserHttpClient(String) - Method in class org.eaglei.services.repository.RepositorySecurityProvider

getWhoamiUrl() - Method in class org.eaglei.services.repository.RepositoryHttpConfig

I

IAO_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

IAO_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

instanceProvider() - Method in class org.eaglei.services.repository.RepositoryConfig

InstitutionRegistry - Class in org.eaglei.services

InstitutionRegistry() - Constructor for class org.eaglei.services.InstitutionRegistry

isValid(String) - Method in class org.eaglei.services.repository.RepositorySecurityProvider

L

LAB_NAME_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

LAB_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

LABEL_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

labProperties - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

labRestrictionPattern(EIURI) - Static method in class org.eaglei.services.repository.SPARQLQueryUtil

logIn(String, String, String) - Method in class org.eaglei.services.repository.RepositorySecurityProvider

logOut(String) - Method in class org.eaglei.services.repository.RepositorySecurityProvider

N

nameSpaceMap - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

NodeConfig - Class in org.eaglei.services

NodeConfig() - Constructor for class org.eaglei.services.NodeConfig

NON_ONTOLOGY_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

O

OBI_OBJECTIVE - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

OBI_ORGANIZATION - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

OBI_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

OBI_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

OBO_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

org.eaglei.services - package org.eaglei.services

org.eaglei.services.repository - package org.eaglei.services.repository

OWNER_NAME_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

OWNER_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

P

PRODUCTION_TIER - Static variable in class org.eaglei.services.InstitutionRegistry

ProviderUtils - Class in org.eaglei.services.repository

ProviderUtils() - Constructor for class org.eaglei.services.repository.ProviderUtils

PUBLISH_ENTITY - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

PUBLISH_STATE_LABEL - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

PUBLISH_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

PUBLISHED_NG - Static variable in class org.eaglei.services.repository.RepositoryHttpConfig

PUBLISHED_STATE - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

PUBLISHED_VIEW - Static variable in class org.eaglei.services.repository.RepositoryHttpConfig

R

RDF_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

RDF_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

RDFS_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

RDFS_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

READ_VIEW - Static variable in class org.eaglei.services.repository.RepositoryInstanceProvider

referencedByPattern(EIURI) - Static method in class org.eaglei.services.repository.SPARQLQueryUtil

RepositoryConfig - Class in org.eaglei.services.repository

A Spring java-based config file for creating a repository-backed SecurityProvider bean.

RepositoryConfig() - Constructor for class org.eaglei.services.repository.RepositoryConfig

RepositoryHttpConfig - Class in org.eaglei.services.repository

Configuration for connecting to the repository.

RepositoryHttpConfig(NodeConfig, String) - Constructor for class org.eaglei.services.repository.RepositoryHttpConfig

Constructs a RepositoryHttpConfig from the given node configuration.

RepositoryHttpConfig(String) - Constructor for class org.eaglei.services.repository.RepositoryHttpConfig

Constructs a client using the given host URL.

RepositoryInstanceProvider - Class in org.eaglei.services.repository

RepositoryInstanceProvider(EIOntModel, RepositorySecurityProvider, InstitutionRegistry, EIInstanceFactory) - Constructor for class org.eaglei.services.repository.RepositoryInstanceProvider

RepositoryProviderException - Exception in org.eaglei.services.repository

RepositoryProviderException() - Constructor for exception org.eaglei.services.repository.RepositoryProviderException

RepositoryProviderException(String) - Constructor for exception org.eaglei.services.repository.RepositoryProviderException

RepositoryProviderException(Throwable) - Constructor for exception org.eaglei.services.repository.RepositoryProviderException

RepositoryProviderException(String, Throwable) - Constructor for exception org.eaglei.services.repository.RepositoryProviderException

RepositorySecurityProvider - Class in org.eaglei.services.repository

RepositorySecurityProvider(InstitutionRegistry) - Constructor for class org.eaglei.services.repository.RepositorySecurityProvider

Intitialize from InstitutionRegistry configuration info.

resultSetVariables - Static variable in interface org.eaglei.services.repository.SPARQLConstants

RO_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

RO_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

S

securityProvider() - Method in class org.eaglei.services.repository.RepositoryConfig

setLabel(String) - Method in class org.eaglei.services.NodeConfig

setLocalNodeId(String) - Method in class org.eaglei.services.InstitutionRegistry

setNodeConfigs(List<NodeConfig>) - Method in class org.eaglei.services.InstitutionRegistry

setNodeId(String) - Method in class org.eaglei.services.NodeConfig

setRepositoryHostUrl(String) - Method in class org.eaglei.services.NodeConfig

setSearchPassword(String) - Method in class org.eaglei.services.NodeConfig

setSearchPassword(String) - Method in class org.eaglei.services.repository.RepositoryHttpConfig

setSearchUsername(String) - Method in class org.eaglei.services.NodeConfig

setSearchUsername(String) - Method in class org.eaglei.services.repository.RepositoryHttpConfig

setTier(String) - Method in class org.eaglei.services.InstitutionRegistry

setUri(String) - Method in class org.eaglei.services.NodeConfig

SO_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

SO_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

SPARQLConstants - Interface in org.eaglei.services.repository

SPARQLOntConstants - Interface in org.eaglei.services.repository

SPARQLQueryUtil - Class in org.eaglei.services.repository

SPARQLQueryUtil() - Constructor for class org.eaglei.services.repository.SPARQLQueryUtil

STATE_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

SUBJECT_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

SW_DATA - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

SWO_PREFIX - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

SWO_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

T

TYPE_VARIABLE - Static variable in interface org.eaglei.services.repository.SPARQLConstants

W

WITHDRAW_ENTITY - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

WITHDRAW_STATE_LABEL - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

WITHDRAW_URI - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

WITHDRAWN_STATE - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

WORKFLOW_OWNER - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

WORKFLOW_OWNER_LABEL - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

WORKFLOW_STATUS - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

WORKFLOW_STATUS_LABEL - Static variable in interface org.eaglei.services.repository.SPARQLOntConstants

A C D E F G I L N O P R S T W