A B C D E F G H I J L M N O P Q R S T U V W X

A

add(String, String) - Static method in class org.eaglei.datatools.etl.utils.NamespaceManager

Adds a single namespace key/value pair to the list

addAll(Map) - Static method in class org.eaglei.datatools.etl.utils.NamespaceManager

Adds all the namespace key/value pairs in the map to the list of all current namespaces

ADDITIONAL_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

ADDITIONAL_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

addMapping(Mapping) - Method in class org.eaglei.datatools.interim.cores.Mapping

addMapping(String, String, String) - Method in class org.eaglei.datatools.interim.cores.Mapping

addMapping(String, String, String, String) - Method in class org.eaglei.datatools.interim.cores.Mapping

B

BASE - Static variable in class org.eaglei.datatools.etl.utils.Configure

baseCol - Static variable in class org.eaglei.datatools.etl.utils.Configure

baseRow - Static variable in class org.eaglei.datatools.etl.utils.Configure

BasicUtils - Class in org.eaglei.datatools.etl.utils

Title: BasicUtils

BasicUtils() - Constructor for class org.eaglei.datatools.etl.utils.BasicUtils

C

capturedWith - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

centerFrame(Window, Window) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Centers a frame with respect to another window, or the whole screen

claim(String, String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

claim(String, String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

clear() - Static method in class org.eaglei.datatools.etl.utils.NamespaceManager

Clear all known namespaces from the manager

CmapToRDF - Class in org.eaglei.datatools.etl.utils

CmapToRDF() - Constructor for class org.eaglei.datatools.etl.utils.CmapToRDF

collectElements(Iterator) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Returns the list of elements returned by an iterator in a Set

collectResourcesFromRDFList(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Return all the resources in a rdf list (like seq, bag or alt) in a Set

compare(Object, Object) - Method in class org.eaglei.datatools.etl.utils.SubclassSortResourceComparator

Configure - Class in org.eaglei.datatools.etl.utils

Configure() - Constructor for class org.eaglei.datatools.etl.utils.Configure

containsAny(Set, Set) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Checks to see if any elements of one set are present in another.

contentTypeAppN3 - Static variable in class org.eaglei.datatools.etl.utils.Configure

contentTypeHTML - Static variable in class org.eaglei.datatools.etl.utils.Configure

contentTypeNTriples - Static variable in class org.eaglei.datatools.etl.utils.Configure

contentTypeRDFXML - Static variable in class org.eaglei.datatools.etl.utils.Configure

contentTypeResultsXML - Static variable in class org.eaglei.datatools.etl.utils.Configure

contentTypeTextN3 - Static variable in class org.eaglei.datatools.etl.utils.Configure

contentTypeTextPlain - Static variable in class org.eaglei.datatools.etl.utils.Configure

contentTypeTurtle - Static variable in class org.eaglei.datatools.etl.utils.Configure

contentTypeXML - Static variable in class org.eaglei.datatools.etl.utils.Configure

convertStringToUnicodeString(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Converts a regular java string to its unicode string representation

convertToJenaModel(EIInstance) - Method in class org.eaglei.datatools.jena.EIInstanceFactory

Cores3BatchRDFGenerator - Class in org.eaglei.datatools.interim.cores

Cores3BatchRDFGenerator() - Constructor for class org.eaglei.datatools.interim.cores.Cores3BatchRDFGenerator

Cores3ExcelParser - Class in org.eaglei.datatools.interim.cores

Cores3ExcelParser(String) - Constructor for class org.eaglei.datatools.interim.cores.Cores3ExcelParser

Cores3ExcelParser.ProcessedTab - Class in org.eaglei.datatools.interim.cores

Cores3ExcelParser.ProcessedTab(Mapping, List<Map<String, String>>) - Constructor for class org.eaglei.datatools.interim.cores.Cores3ExcelParser.ProcessedTab

Cores3Mappings - Class in org.eaglei.datatools.interim.cores

Cores3Mappings() - Constructor for class org.eaglei.datatools.interim.cores.Cores3Mappings

Cores3Model - Class in org.eaglei.datatools.interim.cores

Cores3Model(OntModel) - Constructor for class org.eaglei.datatools.interim.cores.Cores3Model

Cores3RDFGenerator - Class in org.eaglei.datatools.interim.cores

Cores3RDFGenerator() - Constructor for class org.eaglei.datatools.interim.cores.Cores3RDFGenerator

create(EIURI, String, String) - Method in class org.eaglei.datatools.jena.EIInstanceFactory

Create an EIInstance from an RDF String serialization in one of the RDF languages supported by Jena

create(EIURI, Model) - Method in class org.eaglei.datatools.jena.EIInstanceFactory

Create an EIInstance from a Jena model, with a given instanceUri

create(Model) - Method in class org.eaglei.datatools.jena.EIInstanceFactory

Batch creation of a list of EIInstances from a model

create(ResultSet) - Method in class org.eaglei.datatools.jena.EIInstanceFactory

Create method for abridged EIInstances (label, type, owner, WFState, creation date)

createEmpty(EIURI, EIEntity) - Method in class org.eaglei.datatools.jena.EIInstanceFactory

Create an EIInstance with no properties other than an eiType (at least one type must be set)

createInstance(String, EIInstance) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

createInstance(String, String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

createInstance(String, EIInstance) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

createOrCheckModelsWhenSemicolon(Model, String, Rdf123Expression, int, RDFNode, String, String, Map<String, String[]>) - Method in class org.eaglei.datatools.etl.server.RdfMaker

createRepositoryProvider(DatatoolsConfiguration) - Method in class org.eaglei.datatools.jena.RESTRepositoryProviderFactory

createRepositoryProvider(DatatoolsConfiguration) - Method in interface org.eaglei.datatools.provider.RepositoryProviderFactory

Creates a new RepositoryProvider.

createResourceInstance(Mapping, Map<String, String>) - Method in class org.eaglei.datatools.interim.cores.Cores3Model

curatorsComments - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

D

DatatoolsConfiguration - Class in org.eaglei.datatools.config

Configuration for the search application.

DatatoolsConfiguration(File) - Constructor for class org.eaglei.datatools.config.DatatoolsConfiguration

DatatoolsConfiguration(Reader) - Constructor for class org.eaglei.datatools.config.DatatoolsConfiguration

DATE_VARIABLE - Static variable in class org.eaglei.datatools.jena.SPARQLConstants

debug(String) - Method in class org.eaglei.datatools.logging.JSLogger

deleteInstance(String, EIInstance) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

deleteInstance(String, EIInstance) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

DELIMIT - Static variable in class org.eaglei.datatools.etl.utils.Configure

directory - Static variable in class org.eaglei.datatools.etl.server.RdfMaker

E

EAGLE_I_SITES - Static variable in class org.eaglei.datatools.interim.cores.UniversityConstants

EIDataToolsProviderException - Exception in org.eaglei.datatools.provider

EIDataToolsProviderException() - Constructor for exception org.eaglei.datatools.provider.EIDataToolsProviderException

EIDataToolsProviderException(String) - Constructor for exception org.eaglei.datatools.provider.EIDataToolsProviderException

EIDataToolsProviderException(Throwable) - Constructor for exception org.eaglei.datatools.provider.EIDataToolsProviderException

EIDataToolsProviderException(String, Throwable) - Constructor for exception org.eaglei.datatools.provider.EIDataToolsProviderException

EIInstanceFactory - Class in org.eaglei.datatools.jena

EIQuery(String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

EIQuery(String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

encode(URL) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Encodes the specified URL, changes spaces to %20

error(String) - Method in class org.eaglei.datatools.logging.JSLogger

ETLSPARQLQueryUtil - Class in org.eaglei.datatools.etl.server

ETLSPARQLQueryUtil() - Constructor for class org.eaglei.datatools.etl.server.ETLSPARQLQueryUtil

evaluate(String, int) - Method in class org.eaglei.datatools.etl.utils.Rdf123Expression

EX - Static variable in class org.eaglei.datatools.etl.utils.Configure

ExcelParserException - Exception in org.eaglei.datatools.excel

ExcelParserException() - Constructor for exception org.eaglei.datatools.excel.ExcelParserException

ExcelParserException(String) - Constructor for exception org.eaglei.datatools.excel.ExcelParserException

ExcelParserException(Throwable) - Constructor for exception org.eaglei.datatools.excel.ExcelParserException

ExcelParserException(String, Throwable) - Constructor for exception org.eaglei.datatools.excel.ExcelParserException

ExcelToTableModel(InputStream) - Method in class org.eaglei.datatools.etl.server.RdfMaker

converts Excel into CSV TableModel

ExcelUtils - Class in org.eaglei.datatools.excel

ExcelUtils() - Constructor for class org.eaglei.datatools.excel.ExcelUtils

extraData - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

F

FAILED_MESSAGE - Static variable in class org.eaglei.datatools.provider.RepositoryProviderMessages

findMaxCardinality(Property) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns the max cardinality of a property

findMinCardinality(Property) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns the min cardinality of a property

FIRST_ROWS - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

forRegex(String) - Static method in class org.eaglei.datatools.etl.server.ETLSPARQLQueryUtil

G

generateRDFGraph(Map<String, DefaultTableModel>, Map<String, InputStream>) - Method in class org.eaglei.datatools.etl.server.RdfMaker

Generates RDGGraph by tableModel and mapStream and pushes into Repo

generateToFile(String, String, String, OntModel) - Static method in class org.eaglei.datatools.interim.cores.Cores3RDFGenerator

generateToModel(String, OntModel) - Static method in class org.eaglei.datatools.interim.cores.Cores3RDFGenerator

GeneratorException - Exception in org.eaglei.datatools.interim.cores

GeneratorException() - Constructor for exception org.eaglei.datatools.interim.cores.GeneratorException

GeneratorException(String) - Constructor for exception org.eaglei.datatools.interim.cores.GeneratorException

GeneratorException(Throwable) - Constructor for exception org.eaglei.datatools.interim.cores.GeneratorException

GeneratorException(String, Throwable) - Constructor for exception org.eaglei.datatools.interim.cores.GeneratorException

getAllFiles(File) - Static method in class org.eaglei.datatools.interim.cores.OldFileUtils

Deprecated. return a List of all files in input directory (recursively looking into subdirectories)

getAllResources(String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getAllResources(String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

Deprecated.

getAllResourcesInLabQuery(String, EIURI) - Method in class org.eaglei.datatools.jena.SPARQLQueryUtil

Returns a sparql query that gets all the resources with owner=user or no owner and that are associated to a lab

getAllResourcesQuery(String) - Method in class org.eaglei.datatools.jena.SPARQLQueryUtil

Returns a sparql query that gets all the resources with owner = user or no owner

getAllSubClassesOf(Resource, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the subclasses of a given resource

getAllSubClassesOf(Resource, Model, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the subclasses of a given resource

getAllSubPropertiesOf(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the subproperties of the given resource

getAllSubPropertiesOf(Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the subproperties of the given resource

getAllSuperClassesOf(Resource, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the superclasses of a given resource

getAllSuperClassesOf(Resource, Model, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the superclasses of the given resource

getAllSuperPropertiesOf(Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the superclasses of the given resource

getAllTypes(Resource, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Return all types of an instance

getAllTypes(Resource, Model, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Return all types of an instance

getClassMapping() - Method in class org.eaglei.datatools.interim.cores.Cores3ExcelParser.ProcessedTab

getComment(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Get the comment for a resource

getCount() - Method in class org.eaglei.datatools.etl.server.RdfMaker

getCredentialsForRepo(String) - Static method in class org.eaglei.datatools.etl.server.RowConfiguration

Reads the username and password for the repository properties file

getDatatoolsConfiguration() - Method in class org.eaglei.datatools.etl.server.RDFtoRepoService

getDatatoolsMemoryFile() - Method in class org.eaglei.datatools.config.DatatoolsConfiguration

getDatatoolsRepositoryNamespace() - Method in class org.eaglei.datatools.config.DatatoolsConfiguration

getDatatoolsRepositoryProviderFactory() - Method in class org.eaglei.datatools.config.DatatoolsConfiguration

getDatatoolsRepositoryURL() - Method in class org.eaglei.datatools.config.DatatoolsConfiguration

getdcCreatorFromRepoFile(String) - Static method in class org.eaglei.datatools.etl.server.RowConfiguration

getDeclaredProps(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the properties that are declared for a given resource

getDeclaredProps(Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the declared properties for a given resource

getDeclaredRanges(Property) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the explictly declared ranges for the property

getDeclaredRanges(Property, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the explicitly declared ranges for the property

getDefaultPassword() - Method in class org.eaglei.datatools.config.DatatoolsConfiguration

getDefaultThreshold() - Static method in class org.eaglei.datatools.logging.JSLogger

getDefaultUser() - Method in class org.eaglei.datatools.config.DatatoolsConfiguration

getEIResourcesByAllPropertiesQuery(Model) - Static method in class org.eaglei.datatools.etl.server.ETLSPARQLQueryUtil

Returns the a sparql query that asks the repo for the URI of a resource of Model

getEIResourcesByLabelQuery(EIURI, String) - Method in class org.eaglei.datatools.jena.SPARQLQueryUtil

Returns a sparql query that asks the URI of a resource of type rootURI with a label

getEIResourcesByOnlyTypeANDRdfsLabel(Model) - Static method in class org.eaglei.datatools.etl.server.ETLSPARQLQueryUtil

Returns the a sparql query that asks the repo for the URI of a resource of Model ,It builds query of properties containing only rdfs:type and rdfs:lable as predicate

getEIResourcesQueryButnotWithPassProperty(Model, Property) - Static method in class org.eaglei.datatools.etl.server.ETLSPARQLQueryUtil

Returns the a sparql query that asks the repo for the URI of a resource of Model

getEmptyEIInstance(String, EIURI, EIEntity) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getEmptyEIInstance(String, EIURI, EIEntity) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

getFailedMessage(String, int) - Static method in class org.eaglei.datatools.provider.RepositoryProviderMessages

getFileAsString(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Given a path to a file on the local disk, return the contents of that file as a String.

getFilterQuery(String, String, EIURI, EIURI, EIURI) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getFilterQuery(String, EIURI, EIURI, EIURI) - Method in class org.eaglei.datatools.jena.SPARQLQueryUtil

getFilterQuery(String, String, EIURI, EIURI, EIURI) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

getInstance(String) - Static method in class org.eaglei.datatools.etl.server.RDFtoRepoService

getInstance() - Static method in class org.eaglei.datatools.etl.server.RDFtoRepoService

getInstance() - Static method in class org.eaglei.datatools.jena.EIInstanceFactory

getInstance(String, EIURI) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getInstance() - Static method in class org.eaglei.datatools.jena.SPARQLQueryUtil

getInstance(String, EIURI) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

getInstancesForLab(String, String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getInstancesForLab(String, String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

getInstanceURI(String) - Static method in class org.eaglei.datatools.etl.server.RdfMaker

get instance URI from the returned xml

getLabel(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Return the label for a resource with English as the preferred language

getLabel(Resource, String) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Get the label for a resource using the given preferred language

getLabelAndRootURI(Model, int, Rdf123Expression) - Method in class org.eaglei.datatools.etl.server.RdfMaker

getLabelBySubjectExpression(Model, int, Rdf123Expression, String) - Method in class org.eaglei.datatools.etl.server.RdfMaker

getLocalName(String) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns the local name for the specified RDF Id

getLogger(String, JSLogger.Level) - Static method in class org.eaglei.datatools.logging.JSLogger

getLogger(String) - Static method in class org.eaglei.datatools.logging.JSLogger

getMapInfo(String) - Static method in class org.eaglei.datatools.etl.server.RowConfiguration

Reads the username and password for the repository properties file

getMappings() - Method in class org.eaglei.datatools.interim.cores.Mapping

getModel() - Method in class org.eaglei.datatools.interim.cores.Cores3Model

getNewInstanceID(String, int) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getNewInstanceID(String, int) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

getNewInstancesFromRepo(String, int) - Method in class org.eaglei.datatools.etl.server.RDFtoRepoService

gets the new instance from Repo

getObjectFromModelBySubjectAndType(Model, String) - Method in class org.eaglei.datatools.etl.server.RdfMaker

getPrefixForURI(String) - Static method in class org.eaglei.datatools.etl.utils.NamespaceManager

Returns the namespace abbreviation used for the specified identifier

getPrettyRDF(Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Given a Jena model, return the pretty rdf/xml representation of the model NOTE: This function is not complete, dont use, use the jena writer pretty print feature

getProcessedTabs() - Method in class org.eaglei.datatools.interim.cores.Cores3ExcelParser

getProperties() - Method in class org.eaglei.datatools.config.DatatoolsConfiguration

getQName(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns the qname for the given resource

getQNameFor(String) - Static method in class org.eaglei.datatools.etl.utils.NamespaceManager

Encodes an rdf:ID URL as a Qname

getRandomString() - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Returns a randomly generated string of up to 15 characters.

getRandomString(int) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Returns a randomly generated string of up to X characters.

getRanges(Property, Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the ranges for a property with respect to a given class

getRanges(Property, Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns all the ranges for a property with respect to a given class

getRDFXml() - Method in class org.eaglei.datatools.etl.server.RDFtoRepo

getRepositoryProvider() - Method in class org.eaglei.datatools.etl.server.RDFtoRepoService

getResourceOfTypeWIthLabel(Model, RDFNode, String) - Static method in class org.eaglei.datatools.jena.RDFUtil

getResourcesOfClass(String, String, EIURI) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getResourcesOfClass(String, String, EIURI) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

Deprecated.

getResourcesOfClassQuery(String, EIURI) - Method in class org.eaglei.datatools.jena.SPARQLQueryUtil

Returns a sparql query that gets all the resources with rdf:type classUri, with owner=user or no owner

getRetrieveLabelQuery(EIURI) - Method in class org.eaglei.datatools.jena.SPARQLQueryUtil

getRowInfoMap(String, String) - Static method in class org.eaglei.datatools.etl.server.RowConfiguration

Reads the content of rowInfo.prperties file

getSession() - Method in class org.eaglei.datatools.etl.server.RdfMaker

getSourceID() - Method in class org.eaglei.datatools.interim.cores.Mapping

getSourceType() - Method in class org.eaglei.datatools.interim.cores.Mapping

getStringFromBufferedReader(BufferedReader) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Read the contents of the specified reader return them as a String

getTabData() - Method in class org.eaglei.datatools.interim.cores.Cores3ExcelParser.ProcessedTab

getTargetID() - Method in class org.eaglei.datatools.interim.cores.Mapping

getTargetNS() - Method in class org.eaglei.datatools.interim.cores.Mapping

getTargetRangeURI() - Method in class org.eaglei.datatools.interim.cores.Mapping

getTargetRangeURI(String) - Method in class org.eaglei.datatools.interim.cores.Mapping

getTargetUri() - Method in class org.eaglei.datatools.interim.cores.Mapping

getTargetUri(String) - Method in class org.eaglei.datatools.interim.cores.Mapping

getTranslucentVersionOf(Image) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Changes an images alpha values to the specified value.

getType(Resource, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns the most specific type of an instance

getType(Resource, Model, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns the most specific type of an instance

getType() - Method in class org.eaglei.datatools.interim.cores.Mapping

getTypeFromModelByObject(Model, String) - Method in class org.eaglei.datatools.etl.server.RdfMaker

getTypes(Resource, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns the set of all stated types for the given instance

getTypes(Resource, Model, boolean) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

getURIForQName(String) - Static method in class org.eaglei.datatools.etl.utils.NamespaceManager

Returns the full expanded URI for a given qname

getURLAsString(URL) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Returns the specified URL as a string.

getUserInformation(String, HttpClient) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getValue() - Method in enum org.eaglei.datatools.logging.JSLogger.Level

getWFStates(String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getWFStates(String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

getWFStatesList(String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

getWFStatesQuery(String) - Method in class org.eaglei.datatools.jena.SPARQLQueryUtil

H

hexEntityStringConvert(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Converts any hex entity type chars ("é") to their ascii equivalent

I

info(String) - Method in class org.eaglei.datatools.logging.JSLogger

INSTANCE - Static variable in class org.eaglei.datatools.jena.EIInstanceFactory

INSTRUMENT_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

INSTRUMENT_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

isBlankRow(Row) - Static method in class org.eaglei.datatools.excel.ExcelUtils

isClass(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resouce is a Class

isClass(Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resouce is a Class

isDatatypeProperty(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resource is defined as a datatype property

isDatatypeProperty(Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resource is defined as a datatype property

isDebugEnabled() - Method in class org.eaglei.datatools.logging.JSLogger

isErrorEnabled() - Method in class org.eaglei.datatools.logging.JSLogger

isFileURL(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Returns string if the parameter represents a valid file URL

isHigherThanOrEqualTo(JSLogger.Level) - Method in enum org.eaglei.datatools.logging.JSLogger.Level

isInArray(int, int[]) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Returns true or false depending on whether or not the specified string is in the array.

isIndividual(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Return whether or not the given resource is an individual

isInfoEnabled() - Method in class org.eaglei.datatools.logging.JSLogger

isLanguageTerm(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether the given term is in the RDF, RDFS, DAML or OWL namespaces

isObjectProperty(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resource is defined as an object property

isObjectProperty(Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resource is defined as an object property

isOnline() - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

isOnline() - Method in interface org.eaglei.datatools.provider.RepositoryProvider

isOntology(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resource is defined as an owl:Ontology

isOntology(Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resource is defined as an owl:Ontology

isProperty(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resource is a Property

isRDFProperty(Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the given resource is defined as an rdf:Property

isSubClassOf(Resource, Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the first resource is a subclass of the second

isType(Resource, Resource) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the instance is of the specified type

isType(Resource, Resource, Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the instance is of the specified type

isValidRDFId(String) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the specified string is a valid RDF id

isValidURL(String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Returns whether or not the parameter is a valid URL

isWarnEnabled() - Method in class org.eaglei.datatools.logging.JSLogger

isXMLDatatype(String) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns whether or not the specified datatype is a known XSD datatype

J

JenaUtils - Class in org.eaglei.datatools.etl.utils

Title: Jena Utils

JenaUtils() - Constructor for class org.eaglei.datatools.etl.utils.JenaUtils

JSLogger - Class in org.eaglei.datatools.logging

JSLogger.Level - Enum in org.eaglei.datatools.logging

L

LAB_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

LAB_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

LABEL_VARIABLE - Static variable in class org.eaglei.datatools.jena.SPARQLConstants

listClasses(Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

Returns a list of all classes in the model

listIndividuals(Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

List all individuals in the given mode

listProperties(Model) - Static method in class org.eaglei.datatools.etl.utils.JenaUtils

List all properties in the model

log - Static variable in class org.eaglei.datatools.etl.server.RdfMaker

login(String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

login(String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

logout(String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

logout(String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

M

main(String[]) - Static method in class org.eaglei.datatools.etl.server.RdfMaker

main(String[]) - Static method in class org.eaglei.datatools.etl.server.RDFtoRepo

main(String[]) - Static method in class org.eaglei.datatools.etl.utils.CmapToRDF

main(String[]) - Static method in class org.eaglei.datatools.etl.utils.Rdf123Expression

main(String[]) - Static method in class org.eaglei.datatools.interim.cores.Cores3BatchRDFGenerator

main(String[]) - Static method in class org.eaglei.datatools.interim.cores.Cores3RDFGenerator

makeResponseRequest(String, EIInstance) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

makeResponseRequest(String, String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

MAP_BASE - Static variable in class org.eaglei.datatools.etl.utils.Configure

mapDirectory - Static variable in class org.eaglei.datatools.etl.server.RdfMaker

Mapping - Class in org.eaglei.datatools.interim.cores

Mapping(Mapping.MappingType, Mapping.SourceType, String, String, String) - Constructor for class org.eaglei.datatools.interim.cores.Mapping

Mapping(String, String, String) - Constructor for class org.eaglei.datatools.interim.cores.Mapping

Mapping(String, String, String, String) - Constructor for class org.eaglei.datatools.interim.cores.Mapping

Mapping.MappingType - Enum in org.eaglei.datatools.interim.cores

Mapping.SourceType - Enum in org.eaglei.datatools.interim.cores

MAPPINGS - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

maps - Static variable in class org.eaglei.datatools.etl.server.RdfMaker

MAX_SIZE - Static variable in class org.eaglei.datatools.etl.utils.Configure

metaArray - Static variable in class org.eaglei.datatools.etl.utils.Configure

MetadataConstants - Class in org.eaglei.datatools.jena

MetadataConstants() - Constructor for class org.eaglei.datatools.jena.MetadataConstants

N

NamespaceManager - Class in org.eaglei.datatools.etl.utils

A small utility class for managing namespaces and qnames

nextToken() - Method in class org.eaglei.datatools.etl.utils.Rdf123Expression

NO_SESSION_MESSAGE - Static variable in class org.eaglei.datatools.provider.RepositoryProviderMessages

NOT_AUTHORIZED_MESSAGE - Static variable in class org.eaglei.datatools.provider.RepositoryProviderMessages

O

OldFileUtils - Class in org.eaglei.datatools.interim.cores

Deprecated. -- to replace with apache iocommons utilities

OldFileUtils() - Constructor for class org.eaglei.datatools.interim.cores.OldFileUtils

Deprecated.

openWorkBook(String) - Static method in class org.eaglei.datatools.excel.ExcelUtils

oputputdirectory - Static variable in class org.eaglei.datatools.etl.server.RdfMaker

order - Variable in class org.eaglei.datatools.etl.server.RdfMaker

org.eaglei.datatools.config - package org.eaglei.datatools.config

org.eaglei.datatools.etl.server - package org.eaglei.datatools.etl.server

org.eaglei.datatools.etl.utils - package org.eaglei.datatools.etl.utils

org.eaglei.datatools.excel - package org.eaglei.datatools.excel

org.eaglei.datatools.interim.cores - package org.eaglei.datatools.interim.cores

org.eaglei.datatools.jena - package org.eaglei.datatools.jena

org.eaglei.datatools.logging - package org.eaglei.datatools.logging

org.eaglei.datatools.provider - package org.eaglei.datatools.provider

output(String) - Method in enum org.eaglei.datatools.logging.JSLogger.Level

OWNER_VARIABLE - Static variable in class org.eaglei.datatools.jena.SPARQLConstants

P

prefixArray - Static variable in class org.eaglei.datatools.etl.utils.Configure

PRETTY_SIZE - Static variable in class org.eaglei.datatools.etl.utils.Configure

processTab(Sheet, int) - Static method in class org.eaglei.datatools.excel.ExcelUtils

Extract a information in a Tab into a List of Map of

promote(String, String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

promote(String, String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

promoteParameter - Static variable in class org.eaglei.datatools.etl.server.RdfMaker

PROTOCOL_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

PROTOCOL_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

pushtoRepo(Model, String, String, String) - Method in class org.eaglei.datatools.etl.server.RDFtoRepoService

pushed the Model to Repo and promotes it

Q

query(String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

query(String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

R

Rdf123Expression - Class in org.eaglei.datatools.etl.utils

Rdf123Expression(DefaultTableModel, Map, int, String) - Constructor for class org.eaglei.datatools.etl.utils.Rdf123Expression

RdfMaker - Class in org.eaglei.datatools.etl.server

RdfMaker(AnnotationFormModel) - Constructor for class org.eaglei.datatools.etl.server.RdfMaker

RDFtoRepo - Class in org.eaglei.datatools.etl.server

RDFtoRepo() - Constructor for class org.eaglei.datatools.etl.server.RDFtoRepo

rdfToRepoByExcelStream(String, String) - Method in class org.eaglei.datatools.etl.server.RdfMaker

Get all files from the specified directory and call generateRDFGraph(which inturn generates the RDF and pushed into Repo)

RDFtoRepoService - Class in org.eaglei.datatools.etl.server

RDFUtil - Class in org.eaglei.datatools.jena

RDFUtil() - Constructor for class org.eaglei.datatools.jena.RDFUtil

READ_VIEW - Static variable in class org.eaglei.datatools.jena.RESTRepositoryProvider

readOnlyLiterals - Static variable in class org.eaglei.datatools.jena.MetadataConstants

readOnlyResources - Static variable in class org.eaglei.datatools.jena.MetadataConstants

replace(String, String, String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Given a string, replace all occurances of one string with another.

repo - Static variable in class org.eaglei.datatools.etl.server.RdfMaker

RepositoryProvider - Interface in org.eaglei.datatools.provider

RepositoryProviderFactory - Interface in org.eaglei.datatools.provider

Interface for RepositoryProvider factory classes.

RepositoryProviderMessages - Class in org.eaglei.datatools.provider

RepositoryProviderMessages() - Constructor for class org.eaglei.datatools.provider.RepositoryProviderMessages

RESTRepositoryProvider - Class in org.eaglei.datatools.jena

RESTRepositoryProvider(DatatoolsConfiguration) - Constructor for class org.eaglei.datatools.jena.RESTRepositoryProvider

RESTRepositoryProviderFactory - Class in org.eaglei.datatools.jena

RESTRepositoryProviderFactory() - Constructor for class org.eaglei.datatools.jena.RESTRepositoryProviderFactory

retrieveLabel(String, EIURI) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

retrieveLabel(String, EIURI) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

retrieveLabels(String, List<EIEntity>) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

retrieveLabels(String, List<EIEntity>) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

rnavName - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

rnavsComments - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

ROLE_VARIABLE - Static variable in class org.eaglei.datatools.jena.SPARQLConstants

RowConfiguration - Class in org.eaglei.datatools.etl.server

RowConfiguration() - Constructor for class org.eaglei.datatools.etl.server.RowConfiguration

S

saveStringToFile(String, String) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Save the specifed string to the given file name

serialize(EIInstance, String) - Method in class org.eaglei.datatools.jena.EIInstanceFactory

Serialize an EInstance into an RDF language

SERVICE_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

SERVICE_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

setDefaultThreshold(JSLogger.Level) - Static method in class org.eaglei.datatools.logging.JSLogger

setPropertyFilePathAndgetNewRepoProvider(String) - Method in class org.eaglei.datatools.etl.server.RDFtoRepoService

setReadParameters(PostMethod) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

setSession(String) - Method in class org.eaglei.datatools.etl.server.RdfMaker

setWriteParameters(PostMethod, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

SOFTWARE_FIRST_ROW - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

SOFTWARE_MAP - Static variable in class org.eaglei.datatools.interim.cores.Cores3Mappings

SPARQLConstants - Class in org.eaglei.datatools.jena

SPARQLConstants() - Constructor for class org.eaglei.datatools.jena.SPARQLConstants

SPARQLQueryUtil - Class in org.eaglei.datatools.jena

STALE_TOKEN_MESSAGE - Static variable in class org.eaglei.datatools.provider.RepositoryProviderMessages

STATE_VARIABLE - Static variable in class org.eaglei.datatools.jena.SPARQLConstants

SubclassSortResourceComparator - Class in org.eaglei.datatools.etl.utils

Title: SubclassSortResourceComparator

SubclassSortResourceComparator() - Constructor for class org.eaglei.datatools.etl.utils.SubclassSortResourceComparator

SUBJECT_VARIABLE - Static variable in class org.eaglei.datatools.jena.SPARQLConstants

T

template - Static variable in class org.eaglei.datatools.etl.server.RdfMaker

toFrontHack(JFrame, JFrame) - Static method in class org.eaglei.datatools.etl.utils.BasicUtils

Moves a frame in front of another frame

toString() - Method in class org.eaglei.datatools.interim.cores.Mapping

TYPE_VARIABLE - Static variable in class org.eaglei.datatools.jena.SPARQLConstants

U

UNAVAILABLE_MESSAGE - Static variable in class org.eaglei.datatools.provider.RepositoryProviderMessages

UniversityConstants - Class in org.eaglei.datatools.interim.cores

UniversityConstants() - Constructor for class org.eaglei.datatools.interim.cores.UniversityConstants

updateInstance(String, EIInstance, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

updateInstance(String, String, String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

updateInstance(String, EIInstance, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

uploadInstances(String, String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

uploadInstances(String, String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

V

validateDirectory(String, boolean) - Static method in class org.eaglei.datatools.interim.cores.OldFileUtils

Deprecated.

validateDirectory(File, boolean) - Static method in class org.eaglei.datatools.interim.cores.OldFileUtils

Deprecated. Directory is valid if it exists, does not represent a file, and can be read.

valueOf(String) - Static method in enum org.eaglei.datatools.interim.cores.Mapping.MappingType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.eaglei.datatools.interim.cores.Mapping.SourceType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.eaglei.datatools.logging.JSLogger.Level

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.eaglei.datatools.interim.cores.Mapping.MappingType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.eaglei.datatools.interim.cores.Mapping.SourceType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.eaglei.datatools.logging.JSLogger.Level

Returns an array containing the constants of this enum type, in the order they are declared.

W

warn(String) - Method in class org.eaglei.datatools.logging.JSLogger

whoami(String) - Method in class org.eaglei.datatools.jena.RESTRepositoryProvider

whoami(String) - Method in interface org.eaglei.datatools.provider.RepositoryProvider

X

XML_BOOLEAN - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_DATATYPES - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

Array of the URI's of all the XML datatypes

XML_DATE - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_DECIMAL - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_DOUBLE - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_FLOAT - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_INT - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_INTEGER - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_LONG - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_NEGATIVE_INTEGER - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_NONNEGATIVE_INTEGER - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_NONPOSITIVE_INTEGER - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_POSITIVE_INTEGER - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_SHORT - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_STRING - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_TIME - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_UNSIGNED_INT - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_UNSIGNED_LONG - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_UNSIGNED_SHORT - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML_URI - Static variable in class org.eaglei.datatools.etl.utils.JenaUtils

XML Scheme URI

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