org.eaglei.datatools.jena
Class RESTRepositoryProvider

java.lang.Object
  org.eaglei.datatools.jena.RESTRepositoryProvider

All Implemented Interfaces:

RepositoryProvider

public final class RESTRepositoryProvider
extends java.lang.Object
implements RepositoryProvider

Author:

Ricardo De Lima, Lucy Hadden, Daniela Bourges April 11, 2010 Center for Biomedical Informatics (CBMI)

Field Summary

protected static java.lang.String

READ_VIEW

Constructor Summary

RESTRepositoryProvider(DatatoolsConfiguration config)

Method Summary

java.lang.String	claim(java.lang.String session, java.lang.String uri, java.lang.String claimant)
void	createInstance(java.lang.String session, org.eaglei.model.EIInstance instance)
void	createInstance(java.lang.String session, java.lang.String rdfString, java.lang.String id)
void	deleteInstance(java.lang.String session, org.eaglei.model.EIInstance instance)
java.util.List<org.eaglei.model.EIInstance>	EIQuery(java.lang.String session, java.lang.String sparql)
java.util.List<org.eaglei.model.EIInstance>	getAllResources(java.lang.String session, java.lang.String rnav)
org.eaglei.model.EIInstance	getEmptyEIInstance(java.lang.String session, org.eaglei.model.EIURI classUri, org.eaglei.model.EIEntity instanceEntity)
java.util.List<org.eaglei.model.EIInstance>	getFilterQuery(java.lang.String session, java.lang.String user, org.eaglei.model.EIURI classUri, org.eaglei.model.EIURI state, org.eaglei.model.EIURI lab)
org.eaglei.model.EIInstance	getInstance(java.lang.String session, org.eaglei.model.EIURI instanceID)
java.util.List<org.eaglei.model.EIInstance>	getInstancesForLab(java.lang.String session, java.lang.String rnav, java.lang.String labURI)
java.util.List<org.eaglei.model.EIURI>	getNewInstanceID(java.lang.String session, int count)
java.util.List<org.eaglei.model.EIInstance>	getResourcesOfClass(java.lang.String session, java.lang.String rnav, org.eaglei.model.EIURI classUri)
protected java.lang.String[]	getUserInformation(java.lang.String session, org.apache.commons.httpclient.HttpClient client)
java.lang.String[]	getWFStates(java.lang.String session, java.lang.String user)
java.util.List<java.lang.String>	getWFStatesList(java.lang.String session, java.lang.String user)
boolean	isOnline()
java.lang.String[]	login(java.lang.String user, java.lang.String password)
void	logout(java.lang.String session)
protected java.lang.String	makeResponseRequest(java.lang.String session, org.eaglei.model.EIInstance instance)
protected java.lang.String	makeResponseRequest(java.lang.String session, java.lang.String rdfString, java.lang.String id)
java.lang.String	promote(java.lang.String session, java.lang.String uri, java.lang.String newState)
java.lang.String	query(java.lang.String session, java.lang.String sparql)
java.lang.String	retrieveLabel(java.lang.String session, org.eaglei.model.EIURI uri)
java.util.Map<org.eaglei.model.EIEntity,java.lang.String>	retrieveLabels(java.lang.String session, java.util.List<org.eaglei.model.EIEntity> entities)
protected void	setReadParameters(org.apache.commons.httpclient.methods.PostMethod method)
protected void	setWriteParameters(org.apache.commons.httpclient.methods.PostMethod method, java.lang.String id)
java.lang.String	updateInstance(java.lang.String session, org.eaglei.model.EIInstance instance, java.lang.String token)
java.lang.String	updateInstance(java.lang.String session, java.lang.String rdfString, java.lang.String id, java.lang.String token)
void	uploadInstances(java.lang.String session, java.lang.String rdf)
java.lang.String[]	whoami(java.lang.String session)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

READ_VIEW

protected static final java.lang.String READ_VIEW

See Also:

Constant Field Values

Constructor Detail

RESTRepositoryProvider

public RESTRepositoryProvider(DatatoolsConfiguration config)

Method Detail

setWriteParameters

protected void setWriteParameters(org.apache.commons.httpclient.methods.PostMethod method,
                                  java.lang.String id)

setReadParameters

protected void setReadParameters(org.apache.commons.httpclient.methods.PostMethod method)

createInstance

public void createInstance(java.lang.String session,
                           org.eaglei.model.EIInstance instance)
                    throws java.lang.Exception

Specified by:

createInstance in interface RepositoryProvider

Throws:

java.lang.Exception

createInstance

public void createInstance(java.lang.String session,
                           java.lang.String rdfString,
                           java.lang.String id)
                    throws java.lang.Exception

Throws:

java.lang.Exception

deleteInstance

public void deleteInstance(java.lang.String session,
                           org.eaglei.model.EIInstance instance)
                    throws java.lang.Exception

Specified by:

deleteInstance in interface RepositoryProvider

Throws:

java.lang.Exception

updateInstance

public java.lang.String updateInstance(java.lang.String session,
                                       org.eaglei.model.EIInstance instance,
                                       java.lang.String token)
                                throws java.lang.Exception

Specified by:

updateInstance in interface RepositoryProvider

Throws:

java.lang.Exception

updateInstance

public java.lang.String updateInstance(java.lang.String session,
                                       java.lang.String rdfString,
                                       java.lang.String id,
                                       java.lang.String token)
                                throws java.lang.Exception

Throws:

java.lang.Exception

makeResponseRequest

protected java.lang.String makeResponseRequest(java.lang.String session,
                                               org.eaglei.model.EIInstance instance)
                                        throws java.lang.Exception

Throws:

java.lang.Exception

makeResponseRequest

protected java.lang.String makeResponseRequest(java.lang.String session,
                                               java.lang.String rdfString,
                                               java.lang.String id)
                                        throws java.lang.Exception

Throws:

java.lang.Exception

getAllResources

public java.util.List<org.eaglei.model.EIInstance> getAllResources(java.lang.String session,
                                                                   java.lang.String rnav)
                                                            throws java.lang.Exception

Specified by:

getAllResources in interface RepositoryProvider

Throws:

java.lang.Exception

getResourcesOfClass

public java.util.List<org.eaglei.model.EIInstance> getResourcesOfClass(java.lang.String session,
                                                                       java.lang.String rnav,
                                                                       org.eaglei.model.EIURI classUri)
                                                                throws java.lang.Exception

Specified by:

getResourcesOfClass in interface RepositoryProvider

Throws:

java.lang.Exception

getInstance

public org.eaglei.model.EIInstance getInstance(java.lang.String session,
                                               org.eaglei.model.EIURI instanceID)
                                        throws java.lang.Exception

Specified by:

getInstance in interface RepositoryProvider

Throws:

java.lang.Exception

getNewInstanceID

public java.util.List<org.eaglei.model.EIURI> getNewInstanceID(java.lang.String session,
                                                               int count)
                                                        throws java.lang.Exception

Specified by:

getNewInstanceID in interface RepositoryProvider

Throws:

java.lang.Exception

getUserInformation

protected java.lang.String[] getUserInformation(java.lang.String session,
                                                org.apache.commons.httpclient.HttpClient client)
                                         throws java.lang.Exception

Throws:

java.lang.Exception

login

public java.lang.String[] login(java.lang.String user,
                                java.lang.String password)
                         throws java.lang.Exception

Specified by:

login in interface RepositoryProvider

Throws:

java.lang.Exception

logout

public void logout(java.lang.String session)
            throws java.lang.Exception

Specified by:

logout in interface RepositoryProvider

Throws:

java.lang.Exception

whoami

public java.lang.String[] whoami(java.lang.String session)
                          throws java.lang.Exception

Specified by:

whoami in interface RepositoryProvider

Throws:

java.lang.Exception

getEmptyEIInstance

public org.eaglei.model.EIInstance getEmptyEIInstance(java.lang.String session,
                                                      org.eaglei.model.EIURI classUri,
                                                      org.eaglei.model.EIEntity instanceEntity)
                                               throws java.lang.Exception

Specified by:

getEmptyEIInstance in interface RepositoryProvider

Throws:

java.lang.Exception

isOnline

public boolean isOnline()

Specified by:

isOnline in interface RepositoryProvider

query

public java.lang.String query(java.lang.String session,
                              java.lang.String sparql)
                       throws java.lang.Exception

Specified by:

query in interface RepositoryProvider

Throws:

java.lang.Exception

uploadInstances

public void uploadInstances(java.lang.String session,
                            java.lang.String rdf)
                     throws java.lang.Exception

Specified by:

uploadInstances in interface RepositoryProvider

Throws:

java.lang.Exception

claim

public java.lang.String claim(java.lang.String session,
                              java.lang.String uri,
                              java.lang.String claimant)
                       throws java.lang.Exception

Specified by:

claim in interface RepositoryProvider

Throws:

java.lang.Exception

promote

public java.lang.String promote(java.lang.String session,
                                java.lang.String uri,
                                java.lang.String newState)
                         throws java.lang.Exception

Specified by:

promote in interface RepositoryProvider

Throws:

java.lang.Exception

EIQuery

public java.util.List<org.eaglei.model.EIInstance> EIQuery(java.lang.String session,
                                                           java.lang.String sparql)
                                                    throws java.lang.Exception

Specified by:

EIQuery in interface RepositoryProvider

Throws:

java.lang.Exception

getInstancesForLab

public java.util.List<org.eaglei.model.EIInstance> getInstancesForLab(java.lang.String session,
                                                                      java.lang.String rnav,
                                                                      java.lang.String labURI)
                                                               throws java.lang.Exception

Specified by:

getInstancesForLab in interface RepositoryProvider

Throws:

java.lang.Exception

getFilterQuery

public java.util.List<org.eaglei.model.EIInstance> getFilterQuery(java.lang.String session,
                                                                  java.lang.String user,
                                                                  org.eaglei.model.EIURI classUri,
                                                                  org.eaglei.model.EIURI state,
                                                                  org.eaglei.model.EIURI lab)
                                                           throws java.lang.Exception

Specified by:

getFilterQuery in interface RepositoryProvider

Throws:

java.lang.Exception

getWFStatesList

public java.util.List<java.lang.String> getWFStatesList(java.lang.String session,
                                                        java.lang.String user)
                                                 throws java.lang.Exception

Throws:

java.lang.Exception

getWFStates

public java.lang.String[] getWFStates(java.lang.String session,
                                      java.lang.String user)
                               throws java.lang.Exception

Specified by:

getWFStates in interface RepositoryProvider

Throws:

java.lang.Exception

retrieveLabels

public java.util.Map<org.eaglei.model.EIEntity,java.lang.String> retrieveLabels(java.lang.String session,
                                                                                java.util.List<org.eaglei.model.EIEntity> entities)
                                                                         throws java.lang.Exception

Specified by:

retrieveLabels in interface RepositoryProvider

Throws:

java.lang.Exception

retrieveLabel

public java.lang.String retrieveLabel(java.lang.String session,
                                      org.eaglei.model.EIURI uri)
                               throws java.lang.Exception

Specified by:

retrieveLabel in interface RepositoryProvider

Throws:

java.lang.Exception