org.eaglei.search.provider.ncbi
Class NCBIDBProvider

java.lang.Object
  org.eaglei.search.provider.ncbi.NCBIDBProvider

Direct Known Subclasses:

NCBIGeneProvider, NCBIMeSHProvider, NCBIProbeProvider, NCBIPubMedProvider, NCBITaxonomyProvider

public abstract class NCBIDBProvider
extends java.lang.Object

Abstract class that provides search support via eUtils for a specific NCBI Entrez database. Requirement: no dependencies on other eagle-i classes are allowed

Author:

rfrost

Field Summary

protected static boolean	DEBUG
protected static java.lang.String	EAGLEI_TOOL Name of tool for eagle-i that is passed to NCBI eUtils.
protected java.lang.String	entrezDB
protected static org.apache.commons.logging.Log	logger

Constructor Summary

NCBIDBProvider(java.lang.String entrezDB)
Creates a new NCBIDBProvider that executes queries against NCBI.

Method Summary

ESearch.ESearchResult

query(java.lang.String query, int startIndex, int maxResults)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final org.apache.commons.logging.Log logger

DEBUG

protected static final boolean DEBUG

EAGLEI_TOOL

protected static final java.lang.String EAGLEI_TOOL

Name of tool for eagle-i that is passed to NCBI eUtils.

See Also:

Constant Field Values

entrezDB

protected final java.lang.String entrezDB

Constructor Detail

NCBIDBProvider

public NCBIDBProvider(java.lang.String entrezDB)

Creates a new NCBIDBProvider that executes queries against NCBI.

Method Detail

query

public ESearch.ESearchResult query(java.lang.String query,
                                   int startIndex,
                                   int maxResults)
                            throws java.io.IOException

Throws:

java.io.IOException